Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01624 ATGGCAGATCTTGCTAGCTACGGGAATGCCGACCGTGACATCGAGCAGGCATTGGTTGCTTTGAAAAAGGGTGCTCAGCTGCTTAAATATGGTCGTAAAGGAAAACCCAAGTTTTGCCCATTTAGACTTTCTAGTGATGAATTGTCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGCTTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTATTCCAACGTTATCTGCGTCCTGAGAAGgattatttgtctttttcacttatttataACAACGGAAAGTGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTACTGGCCTCAAGGCACTGATATCTTCAGCTCAAGGTGGGCGGTCCAAAATTGACGGATGGAGTGATGGGGGTCTCTATCATGAGGATAGCAGAGACTTGACATCCACTAGTCCAAGTGAAAGCTCAGCTAGTGCCTTGCTAGATATTAGCTCTCCCGACATTTCTGTGAGTCTAAATCCAAATATTTCTCCAAAGAGCTTTCAGCCTGTGAATACTGTGAATTCTGAACGGTCACATGCACCATCAGATTCAACAAATATGCAAGTGAAAGGATCTAATTCAGATGTTTTTCGTGTAAGTGTGTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCTGATGATTGTGATGCTCTGGGGGATGTATACATATGGGGAGAGGTTATCTGTGAGAATATTGTGAAAATTGGTGCTGATAAAAATGCCAGTTATTTCACTCCTAGGGCAGATGTGCTTCTACCCAAACCACTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGGGTTAAACATGCTGCCCTCGTCACACGACAAGGTGAACTATTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAGCCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTTCATACCTGTGCTGTCACAATGGCTGGGGACCTATATACTTGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACTGACATTAGTCATTGGATACCTAAGAGAATTGCAGGTCCACTAGAGGGACTTCAAGTTGCTTTGGTCACTTGTGGTCCATGGCACACAGCTTTAGTAACTTCAACTGGACAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGAGAAAATGTTCCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACTGTAGCAGTTGCATGTGGAGTGTGGCATACTGCTGCCGTGGTGGAGGTTATAGTGACACAATCCAGTGCAAGTGTATCATCAGGGAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGGCTTAAACCAACTTGTGTTCCTTCACTTATTGAttacaattttcataaaattgctTGTGGGCACAGTTTGACTGTTGGCCTGACAACATCAGGACGTGTTTTTACAATGGGCAGCACTGTTTATGGTCAGCTTGGGAATCCTATCTCTGATGGGAAGGTTCCTTGCTTGGTTGAAGACAAGCTTGCTGGAGAATCTGTTGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACGTCCAAAAATGAAGTTTATACATGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGAGATATCGAAGATAGAAAAGCACCAACTTTAGTTGAAGCTTTGAAGGATAGACTTGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCGATATGCCTTCACAAATGGGTATCAGGTGCTGAGCAATCCCAATGCTCTGCTTGCAGACAGGCATTTGGATTCACTAGGAAGAGGCACAATTGTTACAATTGTGGACTTGTGCATTGCCATTCCTGCAGTTCAAGGAAAGCATTAAGAGCAGCTCTGGCTCCTAATCCTGGCAAGCCATATCGTGTTTGTGATCCTTGTTATGCAAAATTGAACAAGGTGGCAGAAGCTGGCAATAATAATAGGAAGAATACCATGCCTCGTTTGTCAGGTGAAAACAAGGACAGGTTAGACAAGTCAGAGTTAAGATTGGCTAAGTCAACAGTGGCTTCTAATGTGGATTTGATCAAACAGCTTGATAGTAAAGCAGCCAAACAAGGGAAGAAGGCTGATACATTCTCCCTAGTTCGCACCTCACAAACACCTTCTTTGCTTCAGCTGAAAGATATTGTCTTGTCTACTGCTGTAGATCTGCGACGCACAGCTCCTAGACCTGTTCTTACACCATCTGCAGTTAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGTCCTCCTCGCTCTGCTACCCCAATTCCAACAACATCAGGACTTTCTTTCTCCAAAAGTATTACTGACAgtttgaagaaaacaaatgaacTTTTAAATCAAGAAGTGCTGAAGTTACGTGCTCAGGTTGAGAGCTTGAAACAGAGATGTGAGCTGCAAGAAGTAGAGCTTCAGAGGTcagcaaagaaaacacaagaaGCTACGGCAGTGGCTGCTGAGGAATCTGCCAAATCTAAAGCTGCTAAAGAAGTCATAAAGTCACTTACAGCACAGCTCAAAGATCTAGCTGAGAGACTCCCTCCTGGAGTTTATGATGCTGAGAATAATATCAGACCAGCTTATCTACCAAATGGTTTGGAGCCGAATGGTGTCCGCTACCCTGACTCAAATGGGGAGAGCCACTCGAGAGCAGAGTCCATCAGTGGCGCTAGCATGGTCTCTGTAGGAATTGAATCTTTGTTGAACAGAACTGAGGGGAATCATCCTGGAATCTATGGAAATACTTTTTACCAGCAAAGCCGTGGAGTTGTGACCTCCAACGGGGCAGATGGGCACTCAGATTTCAGAATGTCAAATGGTGGCGGCATGCATCAGACAAGCAGCAGTAACATGTCAGATATAGTTGATGGAAGAAATTCTGGGCTTTCACAAGATGGCGAGGGTGGTTTGAGATCACGGAATGCTTCATTGGTTGGTAATAGTAATCAAATTGAGGCCGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTTGTGGCTCTGAAGGATGGAACTAGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGAACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGAGAAGGTGTACGAAAAGTACAATGTTCGGAGCACCGACAAGTCTCCCGGCCAAGCGGCAAGAAGGGCAGAGAGTGCAGCTTCGCCTATTTCTCAAGCTCTCCATTA 3374 0.4395 MADLASYGNADRDIEQALVALKKGAQLLKYGRKGKPKFCPFRLSSDELSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKWSLDLICKDKVEAEVWITGLKALISSAQGGRSKIDGWSDGGLYHEDSRDLTSTSPSESSASALLDISSPDISVSLNPNISPKSFQPVNTVNSERSHAPSDSTNMQVKGSNSDVFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKIGADKNASYFTPRADVLLPKPLESNVVLDVHHIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHTCAVTMAGDLYTWGDGTHNAGLLGHGTDISHWIPKRIAGPLEGLQVALVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTVAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPISDGKVPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRLVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDPCYAKLNKVAEAGNNNRKNTMPRLSGENKDRLDKSELRLAKSTVASNVDLIKQLDSKAAKQGKKADTFSLVRTSQTPSLLQLKDIVLSTAVDLRRTAPRPVLTPSAVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRAQVESLKQRCELQEVELQRSAKKTQEATAVAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENNIRPAYLPNGLEPNGVRYPDSNGESHSRAESISGASMVSVGIESLLNRTEGNHPGIYGNTFYQQSRGVVTSNGADGHSDFRMSNGGGMHQTSSSNMSDIVDGRNSGLSQDGEGGLRSRNASLVGNSNQIEAEWIEQYEPGVYITLVALKDGTRDLKRVRFSRRRFGENQAETWWSENREKVYEKYNVRSTDKSPGQAARRAESAASPISQALH 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Bva04g01624 1124 MobiDBLite consensus disorder prediction 786 803 - -
Bva04g01624 1124 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Bva04g01624 1124 MobiDBLite consensus disorder prediction 183 207 - -
Bva04g01624 1124 MobiDBLite consensus disorder prediction 923 942 - -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 351 401 IPR000408 -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 468 515 IPR000408 -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 299 347 IPR000408 -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Bva04g01624 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Bva04g01624 1124 MobiDBLite consensus disorder prediction 1098 1124 - -
Bva04g01624 1124 ProSiteProfiles BRX domain profile. 1042 1097 IPR013591 -
Bva04g01624 1124 SUPERFAMILY RCC1/BLIP-II 236 626 IPR009091 -
Bva04g01624 1124 Coils Coil 825 866 - -
Bva04g01624 1124 SUPERFAMILY PH domain-like 13 123 - -
Bva04g01624 1124 CDD PH_PLC_plant-like 12 124 - -
Bva04g01624 1124 Gene3D - 362 459 IPR009091 -
Bva04g01624 1124 Gene3D - 181 361 IPR009091 -
Bva04g01624 1124 SUPERFAMILY FYVE/PHD zinc finger 625 698 IPR011011 -
Bva04g01624 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Bva04g01624 1124 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1104 - -
Bva04g01624 1124 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1104 - -
Bva04g01624 1124 CDD FYVE_like_SF 634 687 - -
Bva04g01624 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Bva04g01624 1124 Gene3D - 460 636 IPR009091 -
Bva04g01624 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Bva04g01624 1124 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Bva04g01624 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Bva04g01624 1124 Pfam Transcription factor regulating root and shoot growth via Pin3 1041 1096 IPR013591 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Bva04g01624 1124 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Bva04g01624 1124 SMART fyve_4 623 692 IPR000306 GO:0046872
Bva04g01624 1124 Pfam Transcription factor BRX N-terminal domain 876 911 IPR027988 -
Bva04g01624 1124 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872
Bva04g01624 1124 MobiDBLite consensus disorder prediction 786 820 - -
Bva04g01624 1124 Coils Coil 881 901 - -
Bva04g01624 1124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 697 IPR013083 -
Bva04g01624 1124 Gene3D - 13 131 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01624 Bva-Chr4 17304955 17311964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01624 1024 1113 Major Intrinsic Protein MIP AT1G31880 39.423 2.82e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01624 - - gmx:100783270 1867.05