Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01616 ATGCCTTGCGGTTTTGATTACAAACTTTGGATAGATCCTTCTACATGTATGAATCACTTGCTGATCATCTGCTGTGATGTGTTGCTTCTGCTCATGCTCTTATTCATCGTTATGTTCAAGAAGTCATCGCCAAAACCATTTAAAAGTCAAATCTCGggacaaaaatattcaagtttGCAGTTAGGTTCAGCTATAGCAAATGGATCTCTTGGCTTGTTGTATTTATGTTTAGGCATTTGGATTTTAGAGGAGAAGGTGAGGCAAACACACAATGCTTTTCCTCTCAGTAATTGGATGCTAGAATTCTTTCAGGGTTTTACTTGGTTGTTGGTGGGTTTAACAGCAAGTCTTCGACTGAGGCAACTTCCCAGAGCATGGTTGCGGCTTCTAGCTGTTCTTGCTTTCTTGATTTATGGCATCTTCTGTGTTTTATCCTTGTTTTCTGTAATTGGTGGCAGAGAAATGTCCCTTAAGGTAGCTTTAGATGTTCTATCTTTTCCAGTAGCAGTTTTACTGCTTATGTGCACATATAAGGAATATAAGTATGAAGACGCTGATAGAGAGAACAGCGAAAGCCTTTATACCCCTTTAAATGGTGAGTCCAATGGCATTGGTAAAATTAGTTCTCTTGAATGTGTCACTCCATTTGCCAAAGCTGGGTTCTTCAATAAGATGTCATTTGGGTGGTTGAATCTATTGATGAAAACTGGTAAGGAGAAAACACTTCAGGATGAAGATATCCCAAAGTTGGGTGAGGCAGATCAAGCAGAAAGTTGTTATTTGCAGTTTCTGGAACATCTGAacaaacagaaacagaaagaacCGTCATCGGAGCCTTCAATTTTATGGACAATAATTTTATGCCATTGGAGAGACATTTTGGTATCCGGTTTCTATGCATTGATAAAGGTACTCACCCTTTCTGCTGGTCCAATACTCCTGAATGCCTTTATATTGGTAGCTCAGGGTAAAGAGAGTTTCAAATATGAAGGTTATGTCTTGGCCatattacttttctttacAAAGTTCCTAGAATCCATATCACAAAGGCAGTGGTACTTTCATAGCAGACTCATCGGTTTGAGGGTTAGGTCATTGCTTACTGCTGCTATCTATAAGAAGCAACTGAGATTATCCAGTGCATCTAGGTTGGTACACTCTGGTGGTGAGATAATGAGTTACGTGACTGTAGATGCCTATAGAATTGGAGAATTCCCTTTTTGGTTTCACCAGACTTGGACAACAAGCCTCCAAATATGTATAGCTTTAGTAGTTCTCTTCAATGCTGTTGGGCTAGCAACAATAGCTTCCTTAGTGGTGATAGTTATCACTGTGCTTTGCAATACTCCACTTGCTAAGTTACAGCATAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAGGGCTAGTTCTGAGGCTCTTGCGAATATGAAAGTGCTGAAATTATATGCATGGGAAACCCATTTGAAGAATGCTATAGAAAACTTAAGAACAAAGGAGCTCAAATGGATATCAGCAATGCAGTTACAGAAGGCATACAATACATTTCTCTTTTGGTCTTCTCCTGTTGTGGTCTCTGCTGCAACCTTTGGGGCATGTTACTTCCTCAAAGTTCCTTTACATGCAAATAATGCTTTTACCTTTGTGGCAACTTTGCGCCTTCTTCAAGAGCCAATCAGACTCATACCAGATGTTATAGGCATTATAATTCAAGCAAAAGTTTCATTTACAAGGATTGTGAAATTCCTTGAGGCACCAGAATTGCAGAGTAGAAATGTCGAGAAGAGCTTTAATGATAATCTGAAAGGGTCAATTTTGATCAGGTCTGCAGCCTTTTCatgggaagaaaatgaatcaaagcCCACACtaagaaacataaatttagaCGTTAAACCTGGGCAAAAGGTGGCTATTTGTGGTGAAGTTGGTTCTGGAAAATCAACCCTCTTAGCAGCAATTCTTGGAGAAGTTCCTCATACACAGGGCACTATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCTTGGATACAGACAGGTACTATACGAGATAATATACTGTTTGGATCAGCTATGGATGCAAAGAGATATCAAGAAATAATTGAGAGGTCTTCATTAATGAAAGATCTTGAGTTGTTTCCCAATGGTGATCTCACCGAAATAGGGGAAAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAACGAATTCAACTTGCTCGTGCCATTTATCAGAATGCTGATATATATCTGTTGGATGATCCCTTCAGTGCTGTTGATGCACATACTGCCacaaatttgtttaatCAATATGTCATGGAAGGACTTAGAAGCAAGACAGTGTTGCTTGTGACTCATCAAGTTGACTTCCTTCCAGCCTTCGATTCTGTTTTGCTAATGTCCGATGGGGAAATCCTACAAGCTGCTCATTATCACCATCTGTTGTCCTCAAGCCAAGAATTTCAGAACCTTGTCAGTGCTCACAAGGAGACTGCTGGCACTGAAAGGCTTGCTGATGTTGCTTCTGCACAGAAACACATAAAACCTGCGAGAGAGATTAGTAAAGCATATGTGGAGAAGCAGTCTGAAGCATCAAAAGGGGATCAGTTGattaagaaagaagagagagaaagcggAGACACAGGACTCAAGCCTTACTTACAGTATCTTAATCAGAACAGAGGTTATATATACTTCTCAATTGCAGCCCTTACTCACCTTATGTTTGTGATCTGTCAGATAGCACAGAACTCATGGATGGCTGCTAATGTTGATGATCCTAATGTTAACACATTGTGGTTAATCCTAGTATACTTGTTACTTGGAGTTATTTCAACTATTATCTTGTTGATCAGAAGTCTTGCTGTAGTTGCTATGGGTGTTCAATCATCAACATCTTTGTTTTCACAGTTACTGAACTCCCTTTTTCGTGCACCAATGTCATTTTATGACTCTACGCCTTTGGGAAGGATTCTTAGTAGGgtCTCTGCAGATCTGAGCATTGTTGACCTTGATGTCCCGTTCACCCTTATGTTTGCGGTTGGACccacaataaatttttatgcaaGTCTTACAGTTTTAGTAGTTATTACCTGGCAAGTGTTGTTTTTGTCTATACCAATGGTCTATATTGCGATTCGCTTGCAGaAATATTACTTTGCCTCTGCAAAAGAACTTATGCGGATGAATGGCACCACAAAATCCTTTGTAGCTAATCATCTAGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGATTTTTCATGAAGAGTCTTGACCTCATTGATATCAATGCTAGTCCTTTCTTTCACAATTTTGCAGCAAATGAGTGGTTGATTCAACGGCTAGAAACAGTAAGTGCAGTTCTTCTTGCCTCTGCAGCACTTTGTATGGTTGTGCTTCCACCTGGGACTTTCTCCTCTGGATTCATTGGCATGGCACTCTCTTACGGGCTTTCATTAAACCTGGCACTTGTATTCTCTGTACAATACCAGTGCACCAttgcaaattatataatatcagTTGAGAGGCTAAATCAATATATGCATTTATCAAGTGAGGCCCCTGAAGTCATAGAAGGAAATCGTCCTCCTATGAATTGGCCAGCTGTGGGAAAAGTAGTGATAAATGATCTGCAGATACGATACCGGCCGGGTGCACCTCTTGTACTTCGGGGGATCACATGCACATTCCAAGGAGGACACAAGATTGGTATTGTTGGCAGGACAGGTAGTGGAAAATCCACTCTAATCGGTGCTTTGTTTCGTCTTGTGGAGCCTGCAGGTGGAAAGCTTATCATCGATGACATTGACATTTCTTCTATTGGACTTCACGATTTGAGGTCTCGTTTTGGCGTTATACCTCAAGATCCAACTCTCTTTAATGGGACAGTCAGATATAATTTGGACCCTTTTTCTCAACATTCTGATGAGGAGATATGGGAGGTTCTTGGTAAGTGTCAATTGCGCGAGACtgttgaagagaaagaaaagggctTGGACACTTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAACGGCAGTTATTCTGTTTGGGACGCGCTCTTCTAAGGAGAAGCCGGATATTGGTGCTTGATGAAGCTACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACCATCAGGACTGAGTTTGCAGATTGTACTGTAATCACAGTTGCCCATAGAATACCAACTGTGATGGATTGCACTATGGTTCTCGCCATCAGCGATGGAAAACTAGTGGAGTATGATGAGCCAGTGAACTTGATGAAGAGAGAAGGGTCATTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCATTTTCAATCTGCAGAATCACATTG 4391 0.394 MPCGFDYKLWIDPSTCMNHLLIICCDVLLLLMLLFIVMFKKSSPKPFKSQISGQKYSSLQLGSAIANGSLGLLYLCLGIWILEEKVRQTHNAFPLSNWMLEFFQGFTWLLVGLTASLRLRQLPRAWLRLLAVLAFLIYGIFCVLSLFSVIGGREMSLKVALDVLSFPVAVLLLMCTYKEYKYEDADRENSESLYTPLNGESNGIGKISSLECVTPFAKAGFFNKMSFGWLNLLMKTGKEKTLQDEDIPKLGEADQAESCYLQFLEHLNKQKQKEPSSEPSILWTIILCHWRDILVSGFYALIKVLTLSAGPILLNAFILVAQGKESFKYEGYVLAILLFFTKFLESISQRQWYFHSRLIGLRVRSLLTAAIYKKQLRLSSASRLVHSGGEIMSYVTVDAYRIGEFPFWFHQTWTTSLQICIALVVLFNAVGLATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLRASSEALANMKVLKLYAWETHLKNAIENLRTKELKWISAMQLQKAYNTFLFWSSPVVVSAATFGACYFLKVPLHANNAFTFVATLRLLQEPIRLIPDVIGIIIQAKVSFTRIVKFLEAPELQSRNVEKSFNDNLKGSILIRSAAFSWEENESKPTLRNINLDVKPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIEVYGKFAYVSQTAWIQTGTIRDNILFGSAMDAKRYQEIIERSSLMKDLELFPNGDLTEIGERGVNLSGGQKQRIQLARAIYQNADIYLLDDPFSAVDAHTATNLFNQYVMEGLRSKTVLLVTHQVDFLPAFDSVLLMSDGEILQAAHYHHLLSSSQEFQNLVSAHKETAGTERLADVASAQKHIKPAREISKAYVEKQSEASKGDQLIKKEERESGDTGLKPYLQYLNQNRGYIYFSIAALTHLMFVICQIAQNSWMAANVDDPNVNTLWLILVYLLLGVISTIILLIRSLAVVAMGVQSSTSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSADLSIVDLDVPFTLMFAVGPTINFYASLTVLVVITWQVLFLSIPMVYIAIRLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFMKSLDLIDINASPFFHNFAANEWLIQRLETVSAVLLASAALCMVVLPPGTFSSGFIGMALSYGLSLNLALVFSVQYQCTIANYIISVERLNQYMHLSSEAPEVIEGNRPPMNWPAVGKVVINDLQIRYRPGAPLVLRGITCTFQGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKLIIDDIDISSIGLHDLRSRFGVIPQDPTLFNGTVRYNLDPFSQHSDEEIWEVLGKCQLRETVEEKEKGLDTSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPVNLMKREGSLFGQLVKEYWSHFQSAESH 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01616 1463 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524
Bva04g01616 1463 Gene3D ABC transporter type 1, transmembrane domain 865 1198 IPR036640 GO:0005524|GO:0016021
Bva04g01616 1463 Gene3D ABC transporter type 1, transmembrane domain 264 591 IPR036640 GO:0005524|GO:0016021
Bva04g01616 1463 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 294 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01616 1463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1219 1451 IPR003439 GO:0005524
Bva04g01616 1463 Gene3D - 603 837 IPR027417 -
Bva04g01616 1463 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 55 1463 - -
Bva04g01616 1463 SMART AAA_5 635 808 IPR003593 -
Bva04g01616 1463 SMART AAA_5 1243 1435 IPR003593 -
Bva04g01616 1463 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Bva04g01616 1463 SUPERFAMILY ABC transporter transmembrane region 282 587 IPR036640 GO:0005524|GO:0016021
Bva04g01616 1463 Pfam ABC transporter 1234 1382 IPR003439 GO:0005524
Bva04g01616 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1444 IPR027417 -
Bva04g01616 1463 CDD ABC_6TM_ABCC_D1 295 582 IPR044746 GO:0140359
Bva04g01616 1463 Gene3D - 1201 1452 IPR027417 -
Bva04g01616 1463 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 591 831 IPR003439 GO:0005524
Bva04g01616 1463 CDD ABCC_MRP_domain1 608 808 - -
Bva04g01616 1463 CDD ABCC_MRP_domain2 1215 1435 - -
Bva04g01616 1463 Pfam ABC transporter transmembrane region 907 1141 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01616 1463 Pfam ABC transporter transmembrane region 294 561 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01616 1463 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 905 1180 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01616 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 830 IPR027417 -
Bva04g01616 1463 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 55 1463 - -
Bva04g01616 1463 CDD ABC_6TM_ABCC_D2 903 1192 IPR044726 GO:0140359
Bva04g01616 1463 SUPERFAMILY ABC transporter transmembrane region 890 1200 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01616 Bva-Chr4 17203181 17211407 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01616 582 823 Calmodulin-binding Proteins AT2G36910 28.077 3.25e-21 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01616 K05666 - gmx:100811468 2273.43