Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01566 ATGGAGCAGAAGCATGTTTTCTTGTCAGCATTGAGTGTTGGGGTTGGGTTGGGAGTGGGGTTTGGATTGGGTTCAGGGCAGACCGTGCAAAGATGGGTTGGTGGGAATCGCCAGTCAGGGGAGATTTCTGGGGAGATGATTGAGCAGGAACTCATGAGGCAGGTCGTTGATGGCAAGGACAGCAAAGTGACATTCGATGAGTTTCCTTATTTCTTAAGTGAAAGAACACCAGTTTTGTTGACAAGTGCTGCATATGTTCATTTAAAACATATGAACATCTCTAAGCATACCCGAAATCTTTCTCCAGCAAGCAGGACTATTTTGCTTTCTGGACCTGCAGaacTTTACCAGCAAATGCTTGCCAGAGCTCTAGCACATCACTTTGAGTCAAAGTTGCTGCTGCTAGATGTTACTGACTTCTCCTTGAAGATGCAGAACAAATATGGTTGTGGAAGAAAAGAACCTTCTCTTAAAAGGTCCTTATCCGAGTTGACTGTGGAGAAAATGTCCAGTTTGTTTGGTTCCATTTCAAACCTCCCTCCAACTGGCGAAACTAGAGGCATCTTGCGTCGACAAACTAGTAGTGTTGAGAGTAAGCCAAGGAGTATTGGAACTTCCATTAAACACCGTAGGAATGCCTCTACTTCATCTGACATAAGCAGCATTTCTTCCCAGAGTGGTCTTACAAATCCAGCTGCATTGAAGCGCACAAACTGTTTTTGCTTTGATGAAAAACTCTTTCTGCTGTCGCTCCACAAGGTCTTGGTTTCTATCTCAGAAACTGGTTccatcattttatatatcagGAACGTCGAGGAGCTTTTTCTCCAATCAAAAAGGTTATACAATTTGTTCCAAAAGATGCTTGGGAAGCTCACAGGGTCAGTTTTGATACTTGGTTCACGGGCGTTAGATTCAGTAGATGATGATAGGGAAATCGATGAAAGGCTCACTGTGTTATTCCCTTACAACATTAAGATCAAACTGCCTGAAGATGAGACTAATCCTGGCAACTGGAAAGTCCAACTGGAAGACGACATGAAAGTAATTCAATTCCAAGATAACAGAAACCACATTGCTGAAGTATTGACAGCAAATGACATTGAATGTGATGATTTGAATTCAATCAATCATTCAGACACAATACTACTCTCTAATTATATTGAAGAGATTGTGGTATCAGCAATATCATACCATTTGATGAATACTAAGGTTCCAGAATACCGAAATGGAAAGTTAGTTATATCGTCGAAGAGTTTGTCCCATGGATTGAGTCTGTTTCAGGAGGGCCAAATTGGTGGCAAAGATATGCTGAAACTGGAGACTAATGAATCTAAAAAGGATGGAGAAGAGAGTACTGGTGCAAAGAATGAGGTAAAATCTGACACCCAAGCGCCTGAAAGCAAAAGTGAGATCCCTGTCACAAAGAAAGACGGCGACATTTCTGTTcctataaaaGAAGTTTCTCCTGACAATGAGTTTGAGAAGCACATAAGATCAGAGGTTATCCCTGCAAATGAGATTGGGGTTACATTTGCAGATATTGGTGCAATGGATGAAATAAAGGAATCACTTCAAGAACTGGTGATGCTTCCTCTTAGAAGACCGGACCTCTTCAAAGGTGGCCTTCTGAAGCCTTGCAGAGGCATATTGCTTTTTGGGCCTCCGGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCCTTAATGTCTCAATGTCAACCATCACTTCAAAATGGTTTggagaagatgaaaagaatGTCCGAGCTCTGTTCACACTTGCTGCAAAGGTTGCCCcaactattatttttgttgatgagGTTGACAGCATGCTTGGTCAGCGGTCTAGAGCTGGAGAACATGAGGCCATGAGGAAGATCAAAAATGAATTCATGTCCCATTGGGATGGTCTGATGACAAAGGCTAGTGAGCAAATTCTAGTTCTTGCTGCAACTAACAGGCCATTTGACCTTGACGAAGCAATTATTAGACGGTTTGAGCGCAGAATCATGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCCTCAAAACTCTCCTAGCTAAGGAAAAGGTTGATGAAAATATGGACTTTAAAGAGCTTGCTGTCATGACAGAAGGATATACTGGAAGCGATCTTAAGAATTTGTGTACAACCGCAGCTTATCGACCTCTTAGGGAGCTAATACAGCAAGAGAGAATGAAGGAGATGgaaaagaagaagaaagagacagAAGGACAAAGCACAGAAGCTGCTTCTGATGTTAAAGATAAAGAGGAACAAGTAATTACCCTGAGAAATCTAAACATGGAAGACATGAGACAAGCTAAGAGTCAGGTTTCTGCGAGCTTTGTCTCAGAAGGATCGATAATGACAGAGCTGAAACAGTGGAATGATCTGTATGGAGAAGGGGGTTCAAGGAAGAAGCAGCAGCTTACATACTTCTTATA 2474 0.4078 MEQKHVFLSALSVGVGLGVGFGLGSGQTVQRWVGGNRQSGEISGEMIEQELMRQVVDGKDSKVTFDEFPYFLSERTPVLLTSAAYVHLKHMNISKHTRNLSPASRTILLSGPAELYQQMLARALAHHFESKLLLLDVTDFSLKMQNKYGCGRKEPSLKRSLSELTVEKMSSLFGSISNLPPTGETRGILRRQTSSVESKPRSIGTSIKHRRNASTSSDISSISSQSGLTNPAALKRTNCFCFDEKLFLLSLHKVLVSISETGSIILYIRNVEELFLQSKRLYNLFQKMLGKLTGSVLILGSRALDSVDDDREIDERLTVLFPYNIKIKLPEDETNPGNWKVQLEDDMKVIQFQDNRNHIAEVLTANDIECDDLNSINHSDTILLSNYIEEIVVSAISYHLMNTKVPEYRNGKLVISSKSLSHGLSLFQEGQIGGKDMLKLETNESKKDGEESTGAKNEVKSDTQAPESKSEIPVTKKDGDISVPIKEVSPDNEFEKHIRSEVIPANEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFLNVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRSRAGEHEAMRKIKNEFMSHWDGLMTKASEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLAKEKVDENMDFKELAVMTEGYTGSDLKNLCTTAAYRPLRELIQQERMKEMEKKKKETEGQSTEAASDVKDKEEQVITLRNLNMEDMRQAKSQVSASFVSEGSIMTELKQWNDLYGEGGSRKKQQLTYFL 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01566 824 MobiDBLite consensus disorder prediction 444 476 - -
Bva04g01566 824 MobiDBLite consensus disorder prediction 743 766 - -
Bva04g01566 824 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 824 - -
Bva04g01566 824 SMART AAA_5 546 683 IPR003593 -
Bva04g01566 824 Pfam ATPase family associated with various cellular activities (AAA) 550 680 IPR003959 GO:0005524|GO:0016887
Bva04g01566 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 748 IPR027417 -
Bva04g01566 824 Gene3D - 682 757 - -
Bva04g01566 824 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 824 - -
Bva04g01566 824 MobiDBLite consensus disorder prediction 191 222 - -
Bva04g01566 824 ProSitePatterns AAA-protein family signature. 653 672 IPR003960 GO:0005524|GO:0016887
Bva04g01566 824 Coils Coil 733 762 - -
Bva04g01566 824 Pfam AAA+ lid domain 704 747 IPR041569 -
Bva04g01566 824 Gene3D - 509 681 IPR027417 -
Bva04g01566 824 CDD AAA 516 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01566 Bva-Chr4 16358889 16366264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01566 510 758 Calmodulin-binding Proteins AT3G56690 38.889 1.07e-45 175