Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01562 ATGTCTAGCAGAAGGTCCAGGCAGTCATCAGGGTCTACGAGGATCACCGATGACCAAATCATCGAGCTCGTTTCGAAGTTGCGCCAGCTTGTTCCTGAAATCCGCCATAGGCGTTCTGACAAGGTTTCAGCATCTAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTACACAAAGAAGTTGATGATTTAAGTGAGAGACTGTCTCAGTTGTTGGCCACAATTGATGCTGATAGTGCTGAAGCTGCCATCATTAGAAGCCTAATTAACCAATA 278 0.4568 MSSRRSRQSSGSTRITDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRSLHKEVDDLSERLSQLLATIDADSAEAAIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01562 92 Gene3D - 3 87 IPR036638 GO:0046983
Bva04g01562 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Bva04g01562 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Bva04g01562 92 CDD bHLH_AtPRE_like 15 75 - -
Bva04g01562 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Bva04g01562 92 Coils Coil 55 82 - -
Bva04g01562 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Bva04g01562 92 Coils Coil 87 92 - -
Bva04g01562 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01562 Bva-Chr4 16324913 16326119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01562 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 7.20e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g01562 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01562 - - gmx:100796852 152.525