Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01539 ATGTATTGCAACTTTAAGGAGAATGCTGCTGAGTACATTAAGCAAGCAGTTCATGAAGATGATGCAGGAAACTATAGAAAGGCTTTGACCCTTTACATGAGTGCATTAGAATACTTAAAGGTCCATTTGAAGTATGAAAAGAACCCCAAGATTAAGGAAATTGTAACTGAGAAATTTATTGACTACTTGAGGAGGGCAGAGGAGATACGTGCCATTCTTGATACAGGAGGGAGTGGACCTAACTTGAATAATGAAGCAGCCGATGCTGTAAGAGCGAAGCCAAAAGCAAGGAGTGGAGATGAGAGAGACAAGGAGGATCCAGAGAAAGCAAAGCTCAAGGCTGGTCTTGATTCTGTAATAATTAGAGAGAAACCAAATGTTAGATGGAATGATGTTGCTGGGCTTGAGAGTGCCAAACAGGCCTTACAAGAAGCTGTCATATTGCCAGTTAAATTCCCACAATTTTTTACTGGGAAGAGGAAACCATGGAGAGCATTTCTGTTATATGGCCCACCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCAACTGAAGCAGACTCTACATTTTTCAGCGTTTCATCATCTGATCTTGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTGGTATCCAGTCTTTTCCAAATGGCTCGCGAGAGTGCtccatcaataatttttattgatgaaatagATTCTCTATGTGGTCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGACGCATCAAAACAGAACTTCTTGTACAAATGCAGGGTGTTGGTAAAGAAGATCAGAAAGTTCTTATTCTTGCAGCAACCAATACTCCTTATGCTCTGGATAAGGCCATCCGAAGACGATTTGACAAACGAATATACATCCCTCTTCCAGACCTAAAGGCAAGGCAGCACATGTTTAAGGTGCATCTTGGAGATACTCCTCATAATTTAACTGAGAAGGATTTTGAGGAATTGGCCTACAAAACAGATGGATTTTCTGGTTCTGATATTTCTGTTTGTGTTAATGAAGTTCTATTTGAACCTGTTCGTAAAACTTGGGATGCTAAGTTCTTTAGGGAAACATCTAATGGAATGTGGATCCCTTGTGAGCCTAATGAAGAAGGAGCTGTTAACATTAGCCTCCAGGAACTTGATGCACAAGGACTTGCTTCAAAGATTCTTCCACCAGCCATCACAAGAGCAGATTTTGATAAGATCTTAGCAAAGCAGAAGCCGACAGTAAGTAAGGCTGACCTTGAGGTGCATGAGAGATTTACTCAAGAGTTTGGGGAGGAGGGTTG 1301 0.4058 MYCNFKENAAEYIKQAVHEDDAGNYRKALTLYMSALEYLKVHLKYEKNPKIKEIVTEKFIDYLRRAEEIRAILDTGGSGPNLNNEAADAVRAKPKARSGDERDKEDPEKAKLKAGLDSVIIREKPNVRWNDVAGLESAKQALQEAVILPVKFPQFFTGKRKPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKEDQKVLILAATNTPYALDKAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTEKDFEELAYKTDGFSGSDISVCVNEVLFEPVRKTWDAKFFRETSNGMWIPCEPNEEGAVNISLQELDAQGLASKILPPAITRADFDKILAKQKPTVSKADLEVHERFTQEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01539 433 PANTHER AAA DOMAIN-CONTAINING 1 433 - -
Bva04g01539 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 428 IPR027417 -
Bva04g01539 433 MobiDBLite consensus disorder prediction 90 110 - -
Bva04g01539 433 CDD AAA 133 296 - -
Bva04g01539 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Bva04g01539 433 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
Bva04g01539 433 Gene3D - 125 421 IPR027417 -
Bva04g01539 433 Gene3D - 298 413 - -
Bva04g01539 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Bva04g01539 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Bva04g01539 433 SMART smart 2 80 IPR007330 -
Bva04g01539 433 SUPERFAMILY MIT domain 4 82 IPR036181 -
Bva04g01539 433 PANTHER PROTEIN SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 1 433 - -
Bva04g01539 433 SMART AAA_5 162 298 IPR003593 -
Bva04g01539 433 MobiDBLite consensus disorder prediction 80 110 - -
Bva04g01539 433 Gene3D - 6 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01539 Bva-Chr4 15711622 15716319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01539 161 354 Calmodulin-binding Proteins AT3G56690 36.735 1.56e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01539 K12196 - csv:101218878 724.931