Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01485 ATGATGTCCATGTTCAATACTCATCCAATACCAATTTGGTGGGTTCTCgccattttattatttgccCATGCACTAGTTTTTTCTTCATCCAACTTTTTTGGTTCTTCCATCACTGCATCTTTTGCTTTGGCTGCTGCTGATGGAACACTTAATGATGAAGCAAATGCTCTCATACGATGGAAAGCCAGCTATGACAACCAAAGCCAAGTTCTCCTTTCTTCATGGACAGGAAAATTGACCAACTTGTCATATTTGAATCTGGGAGAAAACCAACTTTCTGGCCCCATTCCTAAGGAAATTTGGAAGTTAAGCAACCTAACTAGACTACTTCTCCattccaacaatttttttggttccaTACCAGAAGAAATTGGAACCTTGACAAACCTCATTGAACTTGATTTGTCAACAAACTCTTTCTCTGGTAGAATCCCTTCTACCATAGGAAAGTTGAGCAAATTAGATGCTTTATACCTCCATTTCAACAACCTCTTTGGTTCCATTCCTAATGAAGTAGGAAATTTGACAAGTTTAAGTACGCTTCGTCTCTGGTCAAATGAGCTCTCGGGACCAATCCCAGCTTCCATTGGAAAATTGGTCAATTTGGAAATACTTGCTTTTAGTAATAACAAACTTATAGGACCAATCCCAACTTCTTTTGGAAACTTGACGAAGCTCAATGTATTAAATTTGCGCAACAATAGCTTGAGTGGCCTCATTCCCACGGAAGTGAATAATCTCACTAATTTGGAGGACTTGCAATTAGGTTATAATAATTTCACTGGCCAGTTGCCACAACAGATATGCCTTGGTGGGTTATTGACAAGATTCGGTGCTAACAACAACCATTTCACTGGCCCATTTCCTAGAAGCTTGAAGAATTGCTCTAGCATATATAGAGTCAGGGTTGACACTAATCAACTGACAGGAGACATGGCACAAGATTTTGGTCCTCAAGATCTTCAACAACAGATTGTCAGGTGGCAACCACCTGAACTTGCCGAGGCAGCCAACTTACGAAGACTTAATCTCTCTTCAAATCATTTGACTGGGGAGATTCCCAAAGAACTGGGAAAGTTGTCATCACTGCTTGAACTCTCATTCAGCAACAACATGCTTTCAGGCAACATTCCAACTGAAATTGGAATGTTAGGGAAACTTGAACGGTTGGACTTGTCAGGAAACAAGTTAACCGGTTCAATTCCACAAGTTGTTGGTAACTTGCTCGAGCTATGGAGCTTGAATTTGAGCCAAAATAGATTTGACAAAAGCATCCCCTTTGACATAGGCGACTTACAAAAACTTCAATATCTTGATGTTAGTGGGAATTTGTTGACAGGAACAATACCAACATCTCTTGGCAACCTGCAAAAACTGGAAATCTTGAACCTCTCTCATAACAAGCTTTCTGGAAACATCCCATCCAGTTTTGATGATATGTCTAGCTTAACCTTTGTTGACATAGCTGACAATCAATTATGGGGTCCACTCCCTAATAATCCAGCCTTCCATAGTGCACCGATCGAGGCATTGAAAGACAATCAAGGGTTGTGTGGTAATGTCTCTGGCCTGGCAGTTTGCCCAACATCGAGTTCTAATTCTCATGGTCAacacagaaagaaaattgtgcTACTGATCTTGTTCCTCACACTAGGCACTCTATTGCTAGTGTTAGTTGTAGCtttgttttcatataaattttgtcaaagagaaagaggaatgGGAAACCAAGATGCAGAAGTAGAATGTCAAAATCCTTTTGCAGTGTGGAGTTACGATGGAAAAATAGTGTTCGAGAACATTATTGAAGCCACAGAGGATTTTGACAACAAATACCTCATCGGGGCAGGAGGGCAAGGAATTGTTTACAAAGTTGTGCTGTCCACCGGTCAAGTTGTTGCTGTGAAGAAACTTCACTCTGTTACAGATGGAGAAATGTCAACAGAAATCAGGCACCGTAACATTGTGAAGTTATGTGGCTTTTGCTCACATTCACAATAttcatttttggtttatgAGTTCTTGGAAGGAGGCAACTTGGATAAGATACTAAAAGAAGAGACAAAAGCAATTGAGTTTGATTGGAAAAGAAGGTTGAATGTCGTTGAAGGTGTCGCTAGTGCTTTATCATATATGCATCATGGCTGCTCACCTCCTATAATTCATCGAGATATTTCAAGCAAGAACATTCTGTTCAATTTGAAATGCCAAGCTCACATTTCTGATTTTGGAACAGCTAAGTTTCTCAAACCATCCTCAAGCAATTGGACTTCATTTGCTGGCACTTTTGGCTATGCTGCTCCAgAGTTTGCTTACACTATGGAAGTGAACGAGAAAtgtgatgtttatagttttggagtaTTAGCTCTTGAAATAATTATGGGACAACATCCGGGAGATCTCATCACCTCTTTGTCATCAACCTCATCAGCAGCATATAATTCCCTATTGAAGGATGTGTTGGACCAACGGCTTCCTCATCCTTTCAACTCAGATGCTGAAAAGGTGATCCTAATTGCAAGGATTGCATTTGCTTGCTTGAGGGAAAGTCCTAGTTCTCGCCCAACCCTGGAACAAGTATCTAAGGCAATCGTCATGACAAAGACTCTTCCATTGGACCAATTCCACATTATCACACTTGGAGAACTCCTGAAAGATTG 2660 0.3872 MMSMFNTHPIPIWWVLAILLFAHALVFSSSNFFGSSITASFALAAADGTLNDEANALIRWKASYDNQSQVLLSSWTGKLTNLSYLNLGENQLSGPIPKEIWKLSNLTRLLLHSNNFFGSIPEEIGTLTNLIELDLSTNSFSGRIPSTIGKLSKLDALYLHFNNLFGSIPNEVGNLTSLSTLRLWSNELSGPIPASIGKLVNLEILAFSNNKLIGPIPTSFGNLTKLNVLNLRNNSLSGLIPTEVNNLTNLEDLQLGYNNFTGQLPQQICLGGLLTRFGANNNHFTGPFPRSLKNCSSIYRVRVDTNQLTGDMAQDFGPQDLQQQIVRWQPPELAEAANLRRLNLSSNHLTGEIPKELGKLSSLLELSFSNNMLSGNIPTEIGMLGKLERLDLSGNKLTGSIPQVVGNLLELWSLNLSQNRFDKSIPFDIGDLQKLQYLDVSGNLLTGTIPTSLGNLQKLEILNLSHNKLSGNIPSSFDDMSSLTFVDIADNQLWGPLPNNPAFHSAPIEALKDNQGLCGNVSGLAVCPTSSSNSHGQHRKKIVLLILFLTLGTLLLVLVVALFSYKFCQRERGMGNQDAEVECQNPFAVWSYDGKIVFENIIEATEDFDNKYLIGAGGQGIVYKVVLSTGQVVAVKKLHSVTDGEMSTEIRHRNIVKLCGFCSHSQYSFLVYEFLEGGNLDKILKEETKAIEFDWKRRLNVVEGVASALSYMHHGCSPPIIHRDISSKNILFNLKCQAHISDFGTAKFLKPSSSNWTSFAGTFGYAAPEFAYTMEVNEKCDVYSFGVLALEIIMGQHPGDLITSLSSTSSAAYNSLLKDVLDQRLPHPFNSDAEKVILIARIAFACLRESPSSRPTLEQVSKAIVMTKTLPLDQFHIITLGELLKD 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01485 886 Gene3D Ribonuclease Inhibitor 49 168 IPR032675 -
Bva04g01485 886 SUPERFAMILY Protein kinase-like (PK-like) 591 864 IPR011009 -
Bva04g01485 886 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 138 317 - -
Bva04g01485 886 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 329 868 - -
Bva04g01485 886 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 38 78 - -
Bva04g01485 886 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 77 153 - -
Bva04g01485 886 PRINTS Leucine-rich repeat signature 456 469 - -
Bva04g01485 886 PRINTS Leucine-rich repeat signature 387 400 - -
Bva04g01485 886 Pfam Leucine rich repeat 434 493 IPR001611 GO:0005515
Bva04g01485 886 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Bva04g01485 886 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 138 317 - -
Bva04g01485 886 Pfam Protein kinase domain 610 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01485 886 Gene3D Ribonuclease Inhibitor 169 273 IPR032675 -
Bva04g01485 886 ProSiteProfiles Leucine-rich repeat profile. 338 361 IPR001611 GO:0005515
Bva04g01485 886 SMART LRR_sd22_2 384 410 - -
Bva04g01485 886 SMART LRR_sd22_2 199 225 - -
Bva04g01485 886 SMART LRR_sd22_2 432 458 - -
Bva04g01485 886 SMART LRR_sd22_2 79 108 - -
Bva04g01485 886 SUPERFAMILY L domain-like 291 499 - -
Bva04g01485 886 Gene3D Transferase(Phosphotransferase) domain 1 675 871 - -
Bva04g01485 886 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 329 868 - -
Bva04g01485 886 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 38 78 - -
Bva04g01485 886 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 77 153 - -
Bva04g01485 886 SUPERFAMILY L domain-like 64 313 - -
Bva04g01485 886 ProSitePatterns Tyrosine protein kinases specific active-site signature. 720 732 IPR008266 GO:0004672|GO:0006468
Bva04g01485 886 SMART LRR_typ_2 199 222 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 456 479 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 247 271 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 79 102 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 151 175 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 103 127 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 337 360 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 384 407 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 223 246 IPR003591 -
Bva04g01485 886 SMART LRR_typ_2 408 432 IPR003591 -
Bva04g01485 886 Gene3D Ribonuclease Inhibitor 274 536 IPR032675 -
Bva04g01485 886 ProSiteProfiles Protein kinase domain profile. 608 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01485 886 Gene3D Phosphorylase Kinase; domain 1 573 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01485 Bva-Chr4 15162307 15165593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01485 62 768 Receptor kinase-like Gene Family AT4G08850 44.254 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva04g01485 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01485 - - qsu:111988476 831.632