Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01442 ATGATGTCCATGTTCAATTCTCTTCCAATACCAATTTGGTGGGTTCTcaccattttattatttgccCATGCACTAGTTTTTTGTTCATCCAACTTTTTTGGTTCTTCCATTACTGCATCTTTTGCTTTGGCTGCTGCTGATGGCACACTTAATGATGAAGCAAATGCTCTCTTACGTTGGAAAGCCAGCTATGACAACCAAAGCCAAGTTCTCCTTTCTTCATGGACAGGTAACAGTCCTTGCAACTGGCAAGGAATCACATGTGACCTCACTAAATCAGTCTCACACATAGATTTAAGCAGTCTTGGACTGAGAGGTCCACTTCATACTCTCAACTTCTCCTCTTTGCCCAACCTCATCAGTTTTCACATATTCAACAACTCCTTCTATGGTACTATTCCCCGTCAAGTTGGAAAAATGTCCAAAATGTCTTCATTTCaggtttatataaataatctgTCTGGAGTCTTTCCATCTGAGATACTACAACTGCCTATGCTTTATGAACTAGACTTGGGTGACAATTCTTTTATAGGAACCGTTCCTCAAGAAATAGGAACATTAAAATCCCTAAGTTCTTTCAGCATATATGGGTGCAATTTCAGAGGCTCTCTTCCTATTTCCATAGGAAAATTGACCAACTTGTCAATTTTGAATCTGGGAAATAACCAACTTTCTGGCCCCATTCCTAAGGAAATTTGGAAGTTAAGCAACCTAACTAGAGTAATTCTCCtttccaacaatttttttggttccaTACCAGAAGAAATTGGATCCTTGACAAACCTCATTCAACTTGATTTGTCAACAAACTATTTCTCTGGTAGAATCCCTTCTACCATAGGAAAGTTGAGCAAATTACAGTTTTTATACCTCTATGACAACAATCTCTCTGGTTTCATTCCTAATGAAGTAGGAAACCTCCATTCTCTCATTCAACTTCAATTGTTGGGAAATAAACTTTCTGGTGCAATCCCGGCAACCATAggaaatttgataagtttgagTAGCCTTCTTCTTAGCTCAAATGAGCTCTCGGGACCAATCCCAGCTTCCATTGGAAAATTGGTCAATTTGAAAACACTTGATTTTGCTGAAAACAAACTTATAGGATCAATCCCGCCAAGCATTGGAAACTTGACAAAGCTCAAAGAATTAACTTTGCACAACAATAGCTTCAGTGGCAACATTCCCACGGAAGTGAATAATCTCACTAATTTGGTGAACATGCAATTAggttataataatttcattggcCATTTGCCACAACAGATATGCCTTGGCGGGTTACTGACAAAATTCGGTGCTAACAACAACCATTTCACTGGCCCATTTCCTAGAAGCTTGAAGAATTGCTCTAGCATTTATAGAGTCAGGGTTGACAATAATCAACTGACAGGAGACATGGCACAAGATTTTGGTGTATATCCAACTTTAGACTATATTGATTTGAgtgacaacaaattttatggcCAACTTGCATCAAACTGGGGCAAATGCCATAACCTTACCAGCCTCCAGATCTTCAACAACAGATTGTCAGGTCTTATACCACCTGAACTTGCCGAGGCAGCCAACTTACGAAGACTTAATCTCTCTTCAAATCATTTGACTGGGGAGATTCCCAAAGAACTGGGAAAGTTCTCATCACTGCTTGAACTCTCATTCAGCAACAACATGCTTTCAGGCAACATTCCAACTGAAATTGGAATGTTAGGGAAACTTGAACGCTTGGACTTGTCAGCAAACAAGTTAAGCGGTTCAATTCCACAAGTTGTTGGTAACTTGCTCAAATTATGGAGCTTGAATTTGAGCCAAAATAGATTTGACAAAAGCATCCCCTTTCAGATAGGCGACTTACAAAATCTTCAATATCTTGATTTTAGTGGGAATTTGTTGACAGGAAGAATACCAACATCTCTTGGCAACCTGCAAAGACTGGAAACCTTGAACCTCTCTCATAACAAGCTTTCTGGAAACATCCCATCCAGTTTTGATGATATGTCTAGCTTAACCTTTGTTGACATAGCTGACAATCAATTATGGGGTCCACTCCCTAATAATCCAGCCTTCCATAGTGCACCGATCGACGCATTGAAAGACAATAAAGGGTTGTGTGGTAATGTCTCTAGCCTGGCAGTTTGCCCAACATCGAGTTCTAATTCTCATGGTCAACACACAAAGAAAATTGTGCTACTGGTCTTGTTCCTCACACTAGGCACTCTATTGCTAGTGTTAGTTGTAGCtatgttttcatataaattttgtcaaagagCAAGAGGAATGGGAAACCAAGATGCAGAAGTAGAATGTCAAAATCTTTTTGCAGTGTGGAGTTACGATGGAAAAATAGTGTTCGAGAACATTATTGAAGCCACAGAGGATTTTGACAACAAATACCTCATCGGGGCAGGAGGGCAAGGAATCGTTTACAAAGCTGTCCTGTCCACTGGTCAAGTTGTTGCTGTCAAGAAACTTCACTCTGTTACAGATGGAGAAATGTCCAATCTAAAAGCATTTAAAAATGAGGTTCAAGCCTTAACAGAAATCAGGCACCGTAACATTGTGAAGTTGTATGGCTTTTGCTCACATTCACAATAttcatttttggtttatgAGTTCTTGGAAGGAGGCAGCTTGGATAAGATACTAAAAGAAGAGACAAAAGCAATTGAGTTTGATTGGAAAAGAAGGGTGAATGTCATTGAAGGTGTTGCTAGTGCTTTATCATATATGCATCATGGCTGCTCAGCTCCTATAATTCATCGAGATATTTCAAGCAAGAACATTCTGTTCAATTTGGAATGTGAAGCTCACATTTCTGATTTTGGAACAGCTAAGTTTCTCAAACCATCCTCAAGCAATTGGACATCATTTGCTGGTACTTTTGGCTATGCTGCTCCagAGTTTGCTTACACTATGGAAGTGAACGAGAAATGTGATGTTTATAGCTTTGGAGTATTAGCTCTTGAAATAATTATGGGACAACACCCGAGAGCTCTCATCACCTCTTTGTCATCAATCTCATCAGCAGCATATAATTCCCTATTGAAGGATGTGTTGGACCAACGGCTTCCTCATCCTTTGAACTCAGATGCTGAAAAGGTGATCCTAATTGCAAGGATTGCATTTGCTTGCTTGAGCGAAAGTCCTAGTTCTCGCCCCACCATGGAACAAGTATCCAAGGCAATCGTCATGCCAAAGACTCTTCCATTGGACCAATTCCACATTATCACACTTGGACAACTCCTGAAAGATTG 3260 0.3819 MMSMFNSLPIPIWWVLTILLFAHALVFCSSNFFGSSITASFALAAADGTLNDEANALLRWKASYDNQSQVLLSSWTGNSPCNWQGITCDLTKSVSHIDLSSLGLRGPLHTLNFSSLPNLISFHIFNNSFYGTIPRQVGKMSKMSSFQVYINNLSGVFPSEILQLPMLYELDLGDNSFIGTVPQEIGTLKSLSSFSIYGCNFRGSLPISIGKLTNLSILNLGNNQLSGPIPKEIWKLSNLTRVILLSNNFFGSIPEEIGSLTNLIQLDLSTNYFSGRIPSTIGKLSKLQFLYLYDNNLSGFIPNEVGNLHSLIQLQLLGNKLSGAIPATIGNLISLSSLLLSSNELSGPIPASIGKLVNLKTLDFAENKLIGSIPPSIGNLTKLKELTLHNNSFSGNIPTEVNNLTNLVNMQLGYNNFIGHLPQQICLGGLLTKFGANNNHFTGPFPRSLKNCSSIYRVRVDNNQLTGDMAQDFGVYPTLDYIDLSDNKFYGQLASNWGKCHNLTSLQIFNNRLSGLIPPELAEAANLRRLNLSSNHLTGEIPKELGKFSSLLELSFSNNMLSGNIPTEIGMLGKLERLDLSANKLSGSIPQVVGNLLKLWSLNLSQNRFDKSIPFQIGDLQNLQYLDFSGNLLTGRIPTSLGNLQRLETLNLSHNKLSGNIPSSFDDMSSLTFVDIADNQLWGPLPNNPAFHSAPIDALKDNKGLCGNVSSLAVCPTSSSNSHGQHTKKIVLLVLFLTLGTLLLVLVVAMFSYKFCQRARGMGNQDAEVECQNLFAVWSYDGKIVFENIIEATEDFDNKYLIGAGGQGIVYKAVLSTGQVVAVKKLHSVTDGEMSNLKAFKNEVQALTEIRHRNIVKLYGFCSHSQYSFLVYEFLEGGSLDKILKEETKAIEFDWKRRVNVIEGVASALSYMHHGCSAPIIHRDISSKNILFNLECEAHISDFGTAKFLKPSSSNWTSFAGTFGYAAPEFAYTMEVNEKCDVYSFGVLALEIIMGQHPRALITSLSSISSAAYNSLLKDVLDQRLPHPLNSDAEKVILIARIAFACLSESPSSRPTMEQVSKAIVMPKTLPLDQFHIITLGQLLKD 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01442 1086 SMART LRR_sd22_2 356 382 - -
Bva04g01442 1086 SMART LRR_sd22_2 284 310 - -
Bva04g01442 1086 SMART LRR_sd22_2 620 646 - -
Bva04g01442 1086 SMART LRR_sd22_2 572 598 - -
Bva04g01442 1086 SMART LRR_sd22_2 212 241 - -
Bva04g01442 1086 SUPERFAMILY RNI-like 96 394 - -
Bva04g01442 1086 Gene3D Phosphorylase Kinase; domain 1 759 874 - -
Bva04g01442 1086 SMART LRR_typ_2 525 548 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 356 380 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 212 235 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 284 308 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 572 595 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 644 667 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 596 620 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 404 428 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 164 188 IPR003591 -
Bva04g01442 1086 SMART LRR_typ_2 236 260 IPR003591 -
Bva04g01442 1086 Pfam Leucine rich repeat 622 681 IPR001611 GO:0005515
Bva04g01442 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 126 301 - -
Bva04g01442 1086 Pfam Leucine rich repeat N-terminal domain 51 89 IPR013210 -
Bva04g01442 1086 ProSiteProfiles Protein kinase domain profile. 796 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01442 1086 ProSitePatterns Tyrosine protein kinases specific active-site signature. 920 932 IPR008266 GO:0004672|GO:0006468
Bva04g01442 1086 Pfam Leucine Rich Repeat 526 547 IPR001611 GO:0005515
Bva04g01442 1086 Pfam Protein kinase domain 798 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01442 1086 Gene3D Transferase(Phosphotransferase) domain 1 875 1069 - -
Bva04g01442 1086 Gene3D Ribonuclease Inhibitor 52 166 IPR032675 -
Bva04g01442 1086 Gene3D Ribonuclease Inhibitor 428 718 IPR032675 -
Bva04g01442 1086 Gene3D Ribonuclease Inhibitor 167 275 IPR032675 -
Bva04g01442 1086 Gene3D Ribonuclease Inhibitor 276 427 IPR032675 -
Bva04g01442 1086 SUPERFAMILY Protein kinase-like (PK-like) 782 1062 IPR011009 -
Bva04g01442 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 126 301 - -
Bva04g01442 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 38 189 - -
Bva04g01442 1086 SUPERFAMILY RNI-like 362 683 - -
Bva04g01442 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 274 1068 - -
Bva04g01442 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 38 189 - -
Bva04g01442 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 274 1068 - -
Bva04g01442 1086 PRINTS Leucine-rich repeat signature 644 657 - -
Bva04g01442 1086 PRINTS Leucine-rich repeat signature 575 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01442 Bva-Chr4 14625377 14628767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01442 37 968 Receptor kinase-like Gene Family AT4G08850 43.750 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva04g01442 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01442 - - gmx:100811066 1135.17