Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01396 ATGTTTCCGGGATCCAACAACTCTGGGCCGAGTCAGACGTCGTCAACTCACTGGACTTGGCACAAAAATAAGCCGTTTGAGCAAGCTCTCGAAGTCGTCCCCGAGGACTCGCCGAACCGGTGGGAGAACATCACCGAGCAAGTGCCCGGAAAGTCGCCGGAGGATATCAAAGAACGCTACGATGCTTTGGTCCAAGACGTCAGGATGATTGATTTGGGTCTTCTCAAGCTACCCAATTACGCCGATGATGTGGCAGCGTCACCGGAGGAGGTGTGCGACTCTGCCTCTGTGAATCAGTCCTCCTCTGGGTCTAGACCGACGAGCTCCACGGCGGTCACGAAGAGAAAGGTTGCTCTGTGGACTGTAGAGGAACACAAGCAATTTCTCAAGGGACTGGAGAAATATGGCAGGGGAGATTGGAGAAGAATTTCAATAGACTTTGTTATGACAAAAACACCAGCTCAGGTGGCGAGCCACGCGCAGGGATACTTTGAACGCCAGGATCCAGCTAATAATAAAGGGAGGAGACGAGCAAGCATCAATGACATAACCACAGTGGACACCAAAGTGGTGGCTCCGGCTGTTCGTCGGAGAGAAGACCTCTTTCGCCGGAAGCTGGCAAACAATGAGAGGACAGTGGTGTCTCTGGCCAATGATCAGGATCCCTCCTCCGAAGGGTCCAATTCAACAGTGGAAGCCCCACCAGACCATTTTCCTGAACAGATGGGTGGGAATGGAGATGGAAACTA 749 0.526 MFPGSNNSGPSQTSSTHWTWHKNKPFEQALEVVPEDSPNRWENITEQVPGKSPEDIKERYDALVQDVRMIDLGLLKLPNYADDVAASPEEVCDSASVNQSSSGSRPTSSTAVTKRKVALWTVEEHKQFLKGLEKYGRGDWRRISIDFVMTKTPAQVASHAQGYFERQDPANNKGRRRASINDITTVDTKVVAPAVRRREDLFRRKLANNERTVVSLANDQDPSSEGSNSTVEAPPDHFPEQMGGNGDGN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01396 249 Gene3D - 118 168 - -
Bva04g01396 249 Gene3D - 10 76 - -
Bva04g01396 249 CDD SANT 26 60 IPR001005 -
Bva04g01396 249 ProSiteProfiles Myb-like domain profile. 120 164 IPR001005 -
Bva04g01396 249 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 167 IPR006447 GO:0003677
Bva04g01396 249 SUPERFAMILY Homeodomain-like 114 168 IPR009057 -
Bva04g01396 249 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Bva04g01396 249 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
Bva04g01396 249 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 198 IPR043363 -
Bva04g01396 249 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 13 198 - -
Bva04g01396 249 CDD SANT 120 164 IPR001005 -
Bva04g01396 249 MobiDBLite consensus disorder prediction 208 249 - -
Bva04g01396 249 MobiDBLite consensus disorder prediction 1 22 - -
Bva04g01396 249 MobiDBLite consensus disorder prediction 1 54 - -
Bva04g01396 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 168 IPR017930 -
Bva04g01396 249 ProSiteProfiles Myb-like domain profile. 18 64 IPR001005 -
Bva04g01396 249 SUPERFAMILY Homeodomain-like 13 62 IPR009057 -
Bva04g01396 249 MobiDBLite consensus disorder prediction 211 231 - -
Bva04g01396 249 SMART sant 14 66 IPR001005 -
Bva04g01396 249 SMART sant 116 166 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01396 Bva-Chr4 13013327 13014432 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g01396 Myb_DNA-binding 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01396 - - gmx:547481 176.407