Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01380 ATGTCTCCAGGATCCGACAATGCAACGCCGAGTAAGACCTCGTCGACTCACTGGACTTGGCACGAAAATAAGGTCTTTGAGAATGCTATCGCCGTCGTCCCAGAGGACTTGCCGAACCGGTGGGAGAAAATCGCCGCACAACTGCCCGGAAAGTCGCTGGAGGAGATCAAAGACCACTACGATGCTTTGGTCCGTGACGTCAAGGATATTGAGTCGGGTCTTGTGGAGCTACCCGATTACCGTGATGACGTGGAGGCTTCGGCGGAGAGGGTGTGGGACTCTGTGAATCTGTCCTCCTCTGAGTTTAGACGGAGGAGATCCAAGAGTAATCCGTGGACTGAAGAGGAACACATGCTATTTCTCATGGGAATGGAGGAATATGGCAGGGGAGATTGGAGAGgcatttcaacaaattttgttgCGACAAGAACTCCAACTCAGATAGCAAGCCACGCCCAGAAGTACTTCCCTCGACAGAGTTCCACCAATAAGGAGAGCAGGCGAGCAAGCATCAATGAGATAACCACAGTGGACACCAACGTGGCGCCTCCGGCCATTGGTCAGACTTGCTTGGAATCCGCAAACAATGAGAGGACACCGAGCTTCCCTGATATCATCACAATGTTGCCTCGGTCACCAGTCACAGGGAGGACTTGCTTCGCCGGAATTTTGTG 674 0.5148 MSPGSDNATPSKTSSTHWTWHENKVFENAIAVVPEDLPNRWEKIAAQLPGKSLEEIKDHYDALVRDVKDIESGLVELPDYRDDVEASAERVWDSVNLSSSEFRRRRSKSNPWTEEEHMLFLMGMEEYGRGDWRGISTNFVATRTPTQIASHAQKYFPRQSSTNKESRRASINEITTVDTNVAPPAIGQTCLESANNERTPSFPDIITMLPRSPVTGRTCFAGIL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01380 224 Gene3D - 110 161 - -
Bva04g01380 224 Gene3D - 9 77 - -
Bva04g01380 224 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 190 IPR043363 -
Bva04g01380 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Bva04g01380 224 ProSiteProfiles Myb-like domain profile. 18 64 IPR001005 -
Bva04g01380 224 ProSiteProfiles SANT domain profile. 107 160 IPR017884 -
Bva04g01380 224 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Bva04g01380 224 CDD SANT 111 156 IPR001005 -
Bva04g01380 224 SMART sant 108 158 IPR001005 -
Bva04g01380 224 SMART sant 14 66 IPR001005 -
Bva04g01380 224 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 13 190 - -
Bva04g01380 224 CDD SANT 18 60 IPR001005 -
Bva04g01380 224 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Bva04g01380 224 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 110 158 IPR006447 GO:0003677
Bva04g01380 224 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Bva04g01380 224 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01380 Bva-Chr4 12787192 12788771 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g01380 Myb_DNA-binding 2.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01380 - - gmx:548010 204.912