LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g01375	ATGTCTCAGGAATTGAACAACTCATTGCCGAATCAGACCCAGTCGACTGAGTGGACTCGATTCCACGACAAGCTGTTTGAGCTAGCGCTCGTGACGGTCCCCGAGGACTCGCCCGACCGGTGGGAGAAAATCGCCGAGAAAATGCCCGGAAAATCGCCGGAGGAGATGAAATACCGCTACGAGGCTTTGGTCCGTGACGTCTTGGCGATTGAGTCGGGTTTTGTCGATGTACCCAAGTACCCTGATGATGCGGCGGCTTCGCCGGAGAGGGTGTCGGACTCTGCCAATCAGTTTCCTGTGCCTAGGCCGAGGAAGAGAGGGACTCCGTGGAGTGAAGAGGAACACCAGCGATTTCTCTTGGGACTAGAGAAATATGGCAAGGGAGATTGGAGAAgcatttcaagaaattttgttgTGACAAGATCTCCAACTCAGGTAGCAAGCCACGCCCAGAAGTACTTCCTTCGCCAGAGTTCCGCAAATAACGAGAGGAGACGAGCAAGCATCCACGACATAACCACGGTGGACCCCAACATGGTGGCTCCAGTCATGGGTCAGGTGGAGCACTTCCTTTGCCAGAATTCGGCGAATAATGAAAGGAATCCGGTAAGCACCACGGTGGACCCTAACGTAGTGGTGCCTCCGGCCATTGGGTCGGAGGAGAACCGGAATTCCACGAATAATGAGAGAAGACTAGTAAGCATCCATGGTATAACCCCAGTGAACTCCAACCTGGTGCCTCCGGCCATCGTCCAGGGGGAAAACATTCTTCACCAGAATTGGGTGAATAATGAGAGGACACTAGCAGGCATACATGACAACACGGCGATTCCGGCCGTGACTCCAGCCGTTGGTCAGAACTGGGTTGCTCCTTCAGAACCACCGGAGATCCAGCAGTGGAACCCACCATTCGGTTTTCCTGATCAGATGGGTGGATATGGTGGGTATACTAACTATGGTTTCCATTA	968	0.5238	MSQELNNSLPNQTQSTEWTRFHDKLFELALVTVPEDSPDRWEKIAEKMPGKSPEEMKYRYEALVRDVLAIESGFVDVPKYPDDAAASPERVSDSANQFPVPRPRKRGTPWSEEEHQRFLLGLEKYGKGDWRSISRNFVVTRSPTQVASHAQKYFLRQSSANNERRRASIHDITTVDPNMVAPVMGQVEHFLCQNSANNERNPVSTTVDPNVVVPPAIGSEENRNSTNNERRLVSIHGITPVNSNLVPPAIVQGENILHQNWVNNERTLAGIHDNTAIPAVTPAVGQNWVAPSEPPEIQQWNPPFGFPDQMGGYGGYTNYGFH	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g01375	322	Pfam	Myb-like DNA-binding domain	109	154	IPR001005	-
	Bva04g01375	322	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	102	158	IPR017930	-
	Bva04g01375	322	MobiDBLite	consensus disorder prediction	200	225	-	-
	Bva04g01375	322	ProSiteProfiles	Myb-like domain profile.	10	64	IPR001005	-
	Bva04g01375	322	Gene3D	-	10	77	-	-
	Bva04g01375	322	SMART	sant	106	156	IPR001005	-
	Bva04g01375	322	SMART	sant	14	66	IPR001005	-
	Bva04g01375	322	CDD	SANT	17	64	IPR001005	-
	Bva04g01375	322	ProSiteProfiles	SANT domain profile.	105	158	IPR017884	-
	Bva04g01375	322	SUPERFAMILY	Homeodomain-like	16	72	IPR009057	-
	Bva04g01375	322	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	12	184	IPR043363	-
	Bva04g01375	322	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	12	184	-	-
	Bva04g01375	322	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	105	157	IPR006447	GO:0003677
	Bva04g01375	322	MobiDBLite	consensus disorder prediction	85	111	-	-
	Bva04g01375	322	CDD	SANT	109	154	IPR001005	-
	Bva04g01375	322	Gene3D	-	108	159	-	-
	Bva04g01375	322	ProSiteProfiles	Myb-like domain profile.	102	154	IPR001005	-
	Bva04g01375	322	SUPERFAMILY	Homeodomain-like	103	159	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g01375	Bva-Chr4	12721627	12723588	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Bva04g01375		Myb_DNA-binding	4.4e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g01375	-		-	gmx:547481	226.483