Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01374 ATGTCTCCAGGATCCAACAATGCAACGCCGAGTAAGACCTCGTCGACTCACTGGACTTGGCGCGAAAATAAGGTCTTTGAGAATGCTATCGCCGTCGTCCCCGAGGACTTGCCGAACCGGTGGGAGAAAATCGCCGCACAACTGCCCGGAAAGTCGCCGGAGGAGATCAAAGACCACTACGATGCTTTGGTCCGTGACGTCAAGGATATTGAGTCGGGTCTTGTGGAGCTACCCGATTACCGTGATGACGTGGAGGCTTCGGCGGAGAGGGTGTGGGACTCTGTGAATCTGTCGTCCTCTGAGTTTAGACGGAGGAGATCCAAGAGTAATCGGTGGACTGAAGAGGAACACATGCTATTTCTCATGGGAATGGAGGAATGTGGCAGGGGAGATTGGAGAGgcatttcaagaaattttgttgTGACAAGAACTCCAACTCAGATAGCAAACCACGCCCAGAAGTACTTCCTTCGACAGAGTTCCACAAATAAGGAGAGCAGGCGAGCAAGCATCAATGACATAACCACAGTGGACACCAACGTGGTGCTCCGGCCATTGGTCAGGGAGGAGACTTTCTTCGCGGGAATCCGGCAAAAAATGAGAGGACACTA 611 0.5106 MSPGSNNATPSKTSSTHWTWRENKVFENAIAVVPEDLPNRWEKIAAQLPGKSPEEIKDHYDALVRDVKDIESGLVELPDYRDDVEASAERVWDSVNLSSSEFRRRRSKSNRWTEEEHMLFLMGMEECGRGDWRGISRNFVVTRTPTQIANHAQKYFLRQSSTNKESRRASINDITTVDTNVVLRPLVREETFFAGIRQKMRGH 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01374 203 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Bva04g01374 203 SMART sant 14 66 IPR001005 -
Bva04g01374 203 SMART sant 108 158 IPR001005 -
Bva04g01374 203 Gene3D - 9 77 - -
Bva04g01374 203 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 110 159 IPR006447 GO:0003677
Bva04g01374 203 CDD SANT 111 156 IPR001005 -
Bva04g01374 203 ProSiteProfiles Myb-like domain profile. 18 64 IPR001005 -
Bva04g01374 203 CDD SANT 18 60 IPR001005 -
Bva04g01374 203 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Bva04g01374 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Bva04g01374 203 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 13 185 - -
Bva04g01374 203 Gene3D - 110 161 - -
Bva04g01374 203 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Bva04g01374 203 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 185 IPR043363 -
Bva04g01374 203 ProSiteProfiles SANT domain profile. 107 160 IPR017884 -
Bva04g01374 203 Pfam Myb-like DNA-binding domain 17 60 IPR001005 -
Bva04g01374 203 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01374 Bva-Chr4 12716444 12717917 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g01374 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01374 - - csv:101210268 207.223