Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01373 ATGCCCGGAAAGTCGCCGGAGGAGATGAAATACCGCTACGAGGCTTTGCTCCGTGACGTCTTGGAGGTTGAGTCGGGTTTTGTCGATGTACCCAAGTACCCTGATGATGCGGCGGCTTCGCCGGAGAGGGTGTCGGACTCTGCCAATCAGTTTCCTGTGCCTAGACCGAGGAAGAGAGGGAATCCGTGGAGTGAAGAGGAACACCAGCGATTTCTCTTGGGACTGGAGAAATATGGCAAGGGAGATTGGAGAAgcatttcaagaaattttgttgTGACAAGATCTCCAACTCAGGTAGCAAGCCACGCCCAGAAGTACTTCCTTCGCCAGAGTTCCGAAAATAAGGAGAGGAGACGAGCAAGCATCCACGACATAACCACGGTGGACCCCAACATGGTGGCTCCAGTCATGGGTCAGGTGGAGCACTTCCTTCGCCAGAATTCGGCGAATAATGAAAGGAATCCGGTAAGCACCACGGTGGACCCCAACGTAGTGGTGCCTCCGGCCATTGGATCGGAGGAGGACTGGAATTCCACGAATAATGAGAGGAGACTATTGAGCATCCATGGTATAACCACAGTGGATTCCAACCTGGTGTCTCCGGCCATCGTCCTAGGGGAAAACATTCTTCACCAGAATTTTGTGAATAATGAGAGGACCCTAGCAGGCACACATGACATGATGAAAGTGGACTCCAACACGGCGACTCCGGCCGTGACTCTGGCCGTTGGTCAGAACTGGGTTGCTCCTTCAGTACCACCGGAGATCCAGCAGGGGAACCTACCATACGATTTTCCTGATCAGATGGGTGGATATGGTGGGTATACTAACTATGGTTTCCATTA 845 0.5148 MPGKSPEEMKYRYEALLRDVLEVESGFVDVPKYPDDAAASPERVSDSANQFPVPRPRKRGNPWSEEEHQRFLLGLEKYGKGDWRSISRNFVVTRSPTQVASHAQKYFLRQSSENKERRRASIHDITTVDPNMVAPVMGQVEHFLRQNSANNERNPVSTTVDPNVVVPPAIGSEEDWNSTNNERRLLSIHGITTVDSNLVSPAIVLGENILHQNFVNNERTLAGTHDMMKVDSNTATPAVTLAVGQNWVAPSVPPEIQQGNLPYDFPDQMGGYGGYTNYGFH 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01373 281 CDD SANT 62 107 IPR001005 -
Bva04g01373 281 ProSiteProfiles SANT domain profile. 58 111 IPR017884 -
Bva04g01373 281 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 110 IPR006447 GO:0003677
Bva04g01373 281 MobiDBLite consensus disorder prediction 32 64 - -
Bva04g01373 281 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Bva04g01373 281 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Bva04g01373 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 111 IPR017930 -
Bva04g01373 281 SMART sant 59 109 IPR001005 -
Bva04g01373 281 Gene3D - 61 112 - -
Bva04g01373 281 ProSiteProfiles Myb-like domain profile. 55 107 IPR001005 -
Bva04g01373 281 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 139 IPR043363 -
Bva04g01373 281 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01373 Bva-Chr4 12681454 12683339 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g01373 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01373 - - gmx:547481 169.859