LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g01372	ATGTCTCCAGGATCCAGCAATGCAACGCCGAGTAAGACCTCGTCGACTCACTGGACTTGGCACGAAAATAAGGTCTTTGAGAATGCTATCGCCGTTGTCCCCGAGGACTTGCCGAACCGGTGGGAGAAAATCGCCGCACAACTGCCCGGAAAGTCGCTGGAGGAGATCAAAGATCACTACGATGCTTTGGTCCGTGACGTCAAGGATATTGAGTCGGGTCTTGTGGAGCTACCCGATTACCGTGATGACGTGGAGGCTTCGGCGGAGAGGGTGTGGGACTCTGTGAATCTGTCCTCCTCTGAGTTTAGACGGAGGAGATCCACGAGTAATCCGTGGACTGAAGAGGAACACATGCTATTTCTCATGGGAATGGAGGAATATGGCAGGGGAGATTGGAGAGgcatttcaagaaattttgttgTGACAAGAACTCCAACTCAGATAGCAAGCCACGCCCAGAAGTACTTCCCTCGACAGAGTTCCACCAATAAGGAGAGCAGGCGAGCAAGCATCAATGACATAACCACAGTGGACACCAACGTGGTGCCTCCGGCCATTGGTCAGGGAGGAGACTTTCTTTGCCGGAATCCGGCAAACAATGAGAGGACACTAGTGAGCTTCCCTGATATCATCACAATGTTGCCTCCGGTCACCAGTCACAGGGAGGACTTGCCTCGCCGGAATTTTGTGATTGATAATGAGAGGAGACCAGCAAGCATTCAAGACATAGCCACAGTGGACACCAACGTGGTGCCTCCGGCCAAAGGTCAGGAAGGAGACTTTCTTCGCGGGAATCCGGCAAACAATGAGAGGACACTAGTGAGCTTTCCTAATATCACCACAGCGGTCCCTCCGGCCATCAGTCTCATGACTGACTTCCTTCGCTGGTATTTTGTGAACAATAATGAGAGGAGACTAGCGAGCATGCATGATATCATCACAATGGTGCCTCCGGACAATGATCAGGGTTCCTCCTCCGAAGTGTCCACTGCAGCAACCACAGGAGATCAAACAGTAGAATCCTCACCAAACCATTTTCCCGATCAGACGGGTGGAAATGGACATGGAAacta	1073	0.507	MSPGSSNATPSKTSSTHWTWHENKVFENAIAVVPEDLPNRWEKIAAQLPGKSLEEIKDHYDALVRDVKDIESGLVELPDYRDDVEASAERVWDSVNLSSSEFRRRRSTSNPWTEEEHMLFLMGMEEYGRGDWRGISRNFVVTRTPTQIASHAQKYFPRQSSTNKESRRASINDITTVDTNVVPPAIGQGGDFLCRNPANNERTLVSFPDIITMLPPVTSHREDLPRRNFVIDNERRPASIQDIATVDTNVVPPAKGQEGDFLRGNPANNERTLVSFPNITTAVPPAISLMTDFLRWYFVNNNERRLASMHDIITMVPPDNDQGSSSEVSTAATTGDQTVESSPNHFPDQTGGNGHGN	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g01372	357	ProSiteProfiles	Myb-like domain profile.	18	64	IPR001005	-
	Bva04g01372	357	SMART	sant	108	158	IPR001005	-
	Bva04g01372	357	SMART	sant	14	66	IPR001005	-
	Bva04g01372	357	MobiDBLite	consensus disorder prediction	318	357	-	-
	Bva04g01372	357	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	111	160	IPR017930	-
	Bva04g01372	357	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	13	183	IPR043363	-
	Bva04g01372	357	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	13	183	-	-
	Bva04g01372	357	CDD	SANT	111	156	IPR001005	-
	Bva04g01372	357	MobiDBLite	consensus disorder prediction	317	357	-	-
	Bva04g01372	357	CDD	SANT	18	60	IPR001005	-
	Bva04g01372	357	Pfam	Myb-like DNA-binding domain	110	156	IPR001005	-
	Bva04g01372	357	Gene3D	-	110	161	-	-
	Bva04g01372	357	ProSiteProfiles	SANT domain profile.	107	160	IPR017884	-
	Bva04g01372	357	SUPERFAMILY	Homeodomain-like	16	71	IPR009057	-
	Bva04g01372	357	SUPERFAMILY	Homeodomain-like	106	161	IPR009057	-
	Bva04g01372	357	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	111	158	IPR006447	GO:0003677
	Bva04g01372	357	ProSiteProfiles	Myb-like domain profile.	104	156	IPR001005	-
	Bva04g01372	357	Gene3D	-	9	77	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g01372	Bva-Chr4	12676567	12678520	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Bva04g01372		Myb_DNA-binding	3.6e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g01372	-		-	gmx:547481	210.305