Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01334 ATGAGAACTATTGAAGAGCTCACCACGGCTGGATCTGgcttcttattcttcttcatcttatttattttatcaattgtgATTGCAGTTGCTTTCCATTGTATCCGTCAGCAACTTCCGACCAACATATCTAATGACACCGGTGATGCCATCACAAACTCCGACCACTCCACAATCACAGTGGAACCTTTTGTGGATGAATCTAATTTGTGTAGCTATCCAAAACTCCTAAACTCCAAAGCCAAATTCTATGATAGCAGTTCAAGTGATTCATGCTGCTCTATATGCTTAGTTGATTACAAAGAATCTGATTCATTACGAGTTCTACCGGATTGTGGCCATTTCTTCCATGTCAAGTGTGTTGATCCTTGGCTAACAATGAATTTAACATGCCCTATTTGCCGGAAGTCATTTGTTGGAAGAGTTTA 425 0.3718 MRTIEELTTAGSGFLFFFILFILSIVIAVAFHCIRQQLPTNISNDTGDAITNSDHSTITVEPFVDESNLCSYPKLLNSKAKFYDSSSSDSCCSICLVDYKESDSLRVLPDCGHFFHVKCVDPWLTMNLTCPICRKSFVGRV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01334 141 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Bva04g01334 141 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 138 IPR045899 -
Bva04g01334 141 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 138 - -
Bva04g01334 141 Pfam Ring finger domain 92 134 IPR001841 -
Bva04g01334 141 SMART ring_2 92 133 IPR001841 -
Bva04g01334 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 138 IPR013083 -
Bva04g01334 141 SUPERFAMILY RING/U-box 91 137 - -
Bva04g01334 141 CDD RING-H2_PA-TM-RING 94 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01334 Bva-Chr4 10583822 10584247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01334 30 136 C3H Transcription Factor Family AT2G35910 45.455 2.92e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01334 - - nnu:104590744 126.331