Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01329 atggCGATTTTTGACCCTTCATTTGATGATTTCAACTCTGATATAATCAGCAACATTGAAGACCTTAACTGCGAAGATTTGGAGAAAGAGTCCTCAGGTTCTAGAAGCTTCTTAGACCAGCCACCTTGTGTCCCTCAAGACTCCGTTGAAGATTTGGAATGGTACCCTAATTTCACAGACGACCTTATCTCCTTGACCTGTCTCGAATTCTTGAACAAACCTCATGAGAAAACGAAAACAAAGAACGATGTCGTTTTGGCCCCAAACATGGGATACGAGGATGGTGAGCAGCCGCGACAGCAGACAGGAAGCTATGTGGTCTTGGTATACCAAGATGGTGCGACGTCGTTTTGGAAGAAGCCAAGAAAACAGAGTGGGGTTTGTCGCAGCGCATGGTTAAAATTGGCGGCTGATTTTAAGAATGTAGAAAACGTGCAGGGCAAGAAAAAATGCAGCCATTGTATGATTGAAGAGACTCCTCTGTGGAGGAATGGTCCTCTGGGGCCAAGAACTTTGTGCAATGCGTGCGGTGTCAGGTACAAGTCCGGTAGATTGTTGGCAGAGTATAGACCCGCTGCTAGCCCAACTTTTGATGGCAGAAAGCATTCCAATTTTCATAGAAGGAtaatcaagaagaaaatggcttCAAATTA 653 0.4349 MAIFDPSFDDFNSDIISNIEDLNCEDLEKESSGSRSFLDQPPCVPQDSVEDLEWYPNFTDDLISLTCLEFLNKPHEKTKTKNDVVLAPNMGYEDGEQPRQQTGSYVVLVYQDGATSFWKKPRKQSGVCRSAWLKLAADFKNVENVQGKKKCSHCMIEETPLWRNGPLGPRTLCNACGVRYKSGRLLAEYRPAASPTFDGRKHSNFHRRIIKKKMASN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01329 217 Pfam GATA zinc finger 151 185 IPR000679 GO:0006355|GO:0043565
Bva04g01329 217 CDD ZnF_GATA 150 201 IPR000679 GO:0006355|GO:0043565
Bva04g01329 217 Gene3D - 141 215 IPR013088 GO:0006355|GO:0008270
Bva04g01329 217 PANTHER GATA TRANSCRIPTION FACTOR 4-LIKE 36 214 - -
Bva04g01329 217 ProSiteProfiles GATA-type zinc finger domain profile. 145 181 IPR000679 GO:0006355|GO:0043565
Bva04g01329 217 PANTHER GATA TRANSCRIPTION FACTOR 36 214 - -
Bva04g01329 217 SMART GATA_3 145 199 IPR000679 GO:0006355|GO:0043565
Bva04g01329 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 199 - -
Bva04g01329 217 ProSitePatterns GATA-type zinc finger domain. 151 176 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01329 Bva-Chr4 10385733 10386386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01329 43 211 C2C2-Gata Transcription Factor Family AT3G60530 39.181 1.03e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva04g01329 GATA 6.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01329 - - twl:119983410 160.614