Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01307 ATGGCTAGGCTAGATAGGAATAAAAGCTTAGAGAGCTTGTTAGACATAGATAAACGAGGAACTGGAAAAAATACTAAGCAACTAAGACCCCAGAAATCGATTCCGGGCCATGGCCTTGAATTCAATAACCTCTCATACAGTGTTATGAAGAAGCTGAAGAAGGATGGAGTTTGGATCGAGAAAGAAGCATATCTTCTTCATGACATCACTGGCCAGGCACTGAGGGGTCAGATTACAGCAATCATGGGGCCAAGTGGGGCTGGAAAATCAACCCTTCTTGATGCCTTGGCTGGGAGAATTGCACAAGGGAGCCTAGAAGGATCTGTTAGAATTGATGGAAAACAAGTGACAACAAGTTACATGAAGAGGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTTCCAATGTTGACAGTTTTTGAGACATTTCTGTTTTCAGCTGAGGTTAGACTTCCCCCTTCCATTTCAAgggaggaaaagaagaagagggtGTATGAGCTCATTGATCAATTGGGCTTGCAGAGTGCaacacatacatatattgGTGATGAAGGGAGGAGAGGAGTATCAGGAGGCGAGCGGAGAAGAGTATCTATTGGCATAGACATCATCCATAAACCATCGCTTCTGTTTCTAGATGAACCAACCTCAGGTCTTGATTCTACCAGTGCTTATAGTGTGGTGGAAAAGGTCAAGGACATAGCTCGAGGTGGTAGCATTGTCCTTATGACTATACATCAGCCTTCATATAGAATTCAAATGCTCCTAGACCGTATCACCATCCTAGCAAGAGGAAGACTGATATACATGGGAAGACCAGATGCACTCGGTAATCATCTTTCTGGATTTGGAAGGCCAGTTCCTGAAGGAGAAAACAATATTGAGTATCTGCTAGATGttataaaagaatatgatGAATCAACAGTTGGGCTAGACCCCCTTGTGCTGTACCAACGTGATGGCCTCAAACCTGACCAAGCAGCCATGACACCAGTTCAGAGAACACCAAAAACTTCAAGGACACCTTACAGAAGAAACACATCTGCATCCAAACACATGATTAGCCTGCGCAGCCAAGGATTTGTTGCTGGAACACCTAAACCTGATTCTGCACAGTTTGGttatgatgaagaagatgatgacgAGAATTTTGATAACTCTCTTGAAAGGAGAACTGCTCAAACACCAAGGAACAGGAACATGAACATGAACATGAACAGTAGTGTCCATCCACGTTTAGCTTCTCAATTCTACAAAGATTTCTCAGCTAAAGATTTCTCTGTCTGGCTTTTCCAAGTAGGAACCCCTCGTCGCCCACCATCTTGGACTCCAGCTAGAACTCCAGGATGGGCACCAGGAAAAACACCAGTTTCAGGAGCAAGAAGTGCAATCTCTGGCCCATATTCTGCATCTTACCAGAACCCTTATCGCCCGAAATTCCCTGCTAATGAGAATGTGAGCCAATCCATGGAGTCCTCCTATCAAGCTTCTTTTGAAAACTTTGAGATTGAAGAAGTCCTTGATGAGCCACACCTTGGATCCAAGTTTGCAAACCCATGGATCCGTGAGGTTGTTGTCCTCTCTTGGCGAACAGTTCTTAATGTATATCGTACACCAGAACTCTTCCTCTCACGTGAGATTGTGCTTGCTGTTATGGCACTTGTTCTGTCCACCCTCTTCAATCATCTGGGTGATCCCAATTTGAAAGACATCAATAGGCTTCTCAACTTCTACATCTTTGCAGTGTGCCTTGTGTTCTTTTCCTCCAACGATGCTGTCCCAACTTTCATACTAGAAAGGTTCATCTTCATCAGAGAGACTTCCCACTATGCTTACCGTGCTTCTTCTTATGTCATTTCTTCCCTTATTGTCTATCTCCCGTTTTTTGCCATTCAAGGTTTCACCTTTGCTGCCATAACCAAAGGAATCCTCCACCTGAAAGGCAATCTCTTATACTTCTGGGTGATCCTTTATGCTTCACTGATTACTACCAATGCTTATGTTATGCTTGTTAGTGCACTTGTTCCCAGTTATATCACAGGGTATGCAGTAGTCATAGCCACAACAGCTCTCTTCTTTCTGACTTGTGGCTTCTTCCTTAAGCGAACGCAGATACCAATCTACTGGAAGTGGCTCCACTATATTTCTGCAATCAAATACCCATTTGAGGCATTGCTGACAaatgaattcaagaatgaCGAGTGCTACACAGGGGACCCTAGAGATTTATCTCCTGGACCATTAGGAGAAGTGAAGTACAGCGCCCACCATAATTTTACCAATGGTTGCTTCTTAGGAGAAGATGTTTTGACCTCAATGGATcttcaaatgaaaaacataTGGAACGATAGAAAATG 2360 0.4195 MARLDRNKSLESLLDIDKRGTGKNTKQLRPQKSIPGHGLEFNNLSYSVMKKLKKDGVWIEKEAYLLHDITGQALRGQITAIMGPSGAGKSTLLDALAGRIAQGSLEGSVRIDGKQVTTSYMKRVSSYVMQDDQLFPMLTVFETFLFSAEVRLPPSISREEKKKRVYELIDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSYRIQMLLDRITILARGRLIYMGRPDALGNHLSGFGRPVPEGENNIEYLLDVIKEYDESTVGLDPLVLYQRDGLKPDQAAMTPVQRTPKTSRTPYRRNTSASKHMISLRSQGFVAGTPKPDSAQFGYDEEDDDENFDNSLERRTAQTPRNRNMNMNMNSSVHPRLASQFYKDFSAKDFSVWLFQVGTPRRPPSWTPARTPGWAPGKTPVSGARSAISGPYSASYQNPYRPKFPANENVSQSMESSYQASFENFEIEEVLDEPHLGSKFANPWIREVVVLSWRTVLNVYRTPELFLSREIVLAVMALVLSTLFNHLGDPNLKDINRLLNFYIFAVCLVFFSSNDAVPTFILERFIFIRETSHYAYRASSYVISSLIVYLPFFAIQGFTFAAITKGILHLKGNLLYFWVILYASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPIYWKWLHYISAIKYPFEALLTNEFKNDECYTGDPRDLSPGPLGEVKYSAHHNFTNGCFLGEDVLTSMDLQMKNIWNDRK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01307 786 Pfam ABC transporter 66 218 IPR003439 GO:0005524
Bva04g01307 786 Gene3D - 38 283 IPR027417 -
Bva04g01307 786 Pfam ABC-2 type transporter 525 731 IPR013525 GO:0016020|GO:0140359
Bva04g01307 786 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
Bva04g01307 786 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 290 IPR003439 GO:0005524
Bva04g01307 786 MobiDBLite consensus disorder prediction 332 356 - -
Bva04g01307 786 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 784 - -
Bva04g01307 786 CDD ABCG_EPDR 39 272 - -
Bva04g01307 786 SMART AAA_5 75 275 IPR003593 -
Bva04g01307 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 281 IPR027417 -
Bva04g01307 786 MobiDBLite consensus disorder prediction 331 387 - -
Bva04g01307 786 PANTHER ABC TRANSPORTER 3 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01307 Bva-Chr4 9878810 9882140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01307 76 349 Calmodulin-binding Proteins AT2G36910 24.199 3.42e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01307 K05681 - gmx:100819497 1204.5