Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01289 ATGGAAACCTTTGGATCCAGCTTCAGTTTCTCTACCTCAAATATCAATGTCAATAACTACATGATACCTGAAAAAGAGCACTGTATAAGTACCTCTGCAACAGCTATCCCTTTCACAACAACCAACCTACTACATCGTAACATAAGTAATACAGGTATTTCTAACCATGCCACTTTCTCTAAACTTCTGAAATCGTCCAATTTAAGCAACCGCAGGCCATTCTtagaaaacatcaaaatccCTTCCATGGCGGCTGCAGCGGAGGCTTTAGCTCTTAGCTCCCAAAATCCTATGGTAACAAGTTATAACGAGAATACTTCAGAGAGTAAAGAAGACAAGCACTACAGAGGTGTCAGAAGACGGCCATGGGGGAAGTTCGCAGCCGAGATTCGTGATCCCAATCGTAAAGGCTCTAGGGTATGGCTGGGAACCTTTAACACAGCCATTGAAGCTGCTAGAGGTTATGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTAAATTTTCCTCTTGAGGTCTGCAGTTCTGCAGAATCAAATACAACGGTCGAGGTTggagaaaaaaggagaagagaatATGAGAATAAGAGCGAAGAAAAAGACATGGGGTTTGCAGAGAACAAGGTATTGAAGCTGGAACAGTATTCCCCCAAAGGTGTTTGTGCAATGGTTGGTCCATTAACGCCGTCATGTTGGAAGGGCTTTTGGGACCCAGATGTTAAGGGTACTATCTTTAGTGTACCTCCCTTATCGCCGTTATCTCCCCATCCTTCGTCAGGATGTTCCCAGCTGGTGGTTAATTG 809 0.4203 METFGSSFSFSTSNINVNNYMIPEKEHCISTSATAIPFTTTNLLHRNISNTGISNHATFSKLLKSSNLSNRRPFLENIKIPSMAAAAEALALSSQNPMVTSYNENTSESKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFNTAIEAARGYDRAAFKMRGSKAILNFPLEVCSSAESNTTVEVGEKRRREYENKSEEKDMGFAENKVLKLEQYSPKGVCAMVGPLTPSCWKGFWDPDVKGTIFSVPPLSPLSPHPSSGCSQLVVN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01289 269 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Bva04g01289 269 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Bva04g01289 269 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Bva04g01289 269 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Bva04g01289 269 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 44 252 - -
Bva04g01289 269 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 44 252 - -
Bva04g01289 269 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Bva04g01289 269 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Bva04g01289 269 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Bva04g01289 269 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01289 Bva-Chr4 9564528 9565587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01289 65 269 AP2-EREBP Transcription Factor Family AT5G51190 50.476 1.36e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g01289 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01289 K09286 - gmx:100795866 236.113