Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01259 ATGGCGGGGAAGGAAGAGAATCGAATATTCGTTGGTGGGTTGTCGTGGGATGTCTCGCAGCGTCAGCTCGAGCATGTGTTTGGCCGTTACGGGAAAATTGTTGAAACTCAGATCATGATGGAGAGAGATACTGGCCGTCCACGTGGATTTGGGTTTATTACATATGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGAGAGCTTGGTGACCGGATCATTACTGTCAATAAGGCCCAGCCCAAAATGGGGGGAGATGATTTAGACCATGGTTACAGGGGCAGCTACTCATCAGGTGGTAGGGGAAGTTATGGGGTGGGAGACAGGGTAGGACAGGATGATTGCTTCAAATGTGGGCGTCCAGGGCACTGGGCTCGAGATTGTCCTTTGGCAGGAGGTGGTCGTGGTGGCTCATTCTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGCCGTGTGGACCGCCTTGGTGAACGTGATCGATATGCTGATGATCGATACGATGGAGGGCGTTATGGAGATAGGGATCGCTTTGACAGCCGGGATAACAAATATGGTAGCCGTGATCGCTATGCTAGTGACAGGTATCAAGCCGGTGGGGATCGGTTTGCAAGCGATAGATATGGTGCTCCAGATCGTTACCCGCAAAATGGTTATGGCAAAGATAGAGGCTATGATAGGTACGGTGGACAGCGAGGAGGTACGGATAGGTATGGAAATGGAATTCCAGCACGAGAGGAAGGAAGGAGTTACAGGGAGAGACCTGGTCCTTATGACCGTCCAAGCAGGGGTGGTCGCCAATCTTCCTTTGATAGGTATTA 830 0.5145 MAGKEENRIFVGGLSWDVSQRQLEHVFGRYGKIVETQIMMERDTGRPRGFGFITYADRRGMEDAIKEMHGRELGDRIITVNKAQPKMGGDDLDHGYRGSYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGRGGSFSSRPRFGGAGGRVDRLGERDRYADDRYDGGRYGDRDRFDSRDNKYGSRDRYASDRYQAGGDRFASDRYGAPDRYPQNGYGKDRGYDRYGGQRGGTDRYGNGIPAREEGRSYRERPGPYDRPSRGGRQSSFDRY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01259 276 MobiDBLite consensus disorder prediction 245 276 - -
Bva04g01259 276 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 237 - -
Bva04g01259 276 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Bva04g01259 276 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Bva04g01259 276 MobiDBLite consensus disorder prediction 84 108 - -
Bva04g01259 276 PANTHER TRANSFORMER-2-RELATED 1 237 - -
Bva04g01259 276 SUPERFAMILY Retrovirus zinc finger-like domains 104 139 IPR036875 GO:0003676|GO:0008270
Bva04g01259 276 SMART rrm1_1 8 81 IPR000504 GO:0003723
Bva04g01259 276 Gene3D - 115 142 - -
Bva04g01259 276 MobiDBLite consensus disorder prediction 155 199 - -
Bva04g01259 276 MobiDBLite consensus disorder prediction 137 276 - -
Bva04g01259 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Bva04g01259 276 Gene3D - 1 114 IPR012677 -
Bva04g01259 276 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Bva04g01259 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bva04g01259 276 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01259 Bva-Chr4 9121965 9127232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01259 9 88 C2H2 Transcription Factor Family AT2G19380 40.000 6.65e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01259 - - gmx:100776333 395.201