Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01236 ATGAAGAGGACGAGAGATGAAGTTTTTTCTGGCTCAGGCTCTCAATTCAAACGACCCTTAGGTCCCTCACGTGGGGAGTCCTATGGACAAACCCAAAACCCTGCTGGTGGTTCTGGAAGTGGTGGAGGCATTGCTGGTGgtgatggtggtggtggaggtggAACTACTTCTCAGAAATTGACAACCAATGATGCGTTGTCCTATTTGAAGGAAGTTAAAGACATGTTTCAAgaccaaagagaaaaatatgatatgttCCTTGAAGTCATGAAGGATTTCAAGGCTCAAAGGACTGACACCGCAGGTGTCATAGCAAGGGTAAAGGAACTTTTTAAAGGGCataacaatttgatttttggattTAACACCTTCTTGCCGAAGGGATATGAGATAACacttgatgaagatgaagctcTTCCAAAGAAAACTGTTGAATTTGAGGAAGCTATTAGTTTTGTGAATAAGATAAAGAGACGATTCCAAAACGATGAGCATGTTTACAAATCATTCTTGGATATTTTGAACATGTACCGCAAAGAGCACAAGGACATTTGTGAGGTCTACAGTGAGGTTTCTTCCCTTTTTGAGGATCATCCAGATTTGCTTGAGGAGTTCAAAAGATTCTTACCAGATACTTCTGCAACACCTGCACATCATGCTCCTTATGGTCGAAATTCATTACAGCGTTTCAATGAGCGTAGTTCTACAGAACCAACGATGCGGCAAATGCAAGTGGCCAAGCAACGTTATCAACAAAACAGGCATATTACTCCACAAGAGCATGATCTTAGTGTTGATCGCCATGAGCTGGATGATGACAAAGCAATGATAAAGGTGCACAGAGATCCAAGGAAGCGTGTTGAGAAGGAGAGAAAGGATAGGAGAATTCATGATCAGGATGAGAGAGAACCTGATCATGATATAAACATGCAACATTCtccagaaaaaaagaaatgtgtcAAGAAGGCTGAAGGTTTTGGGTTGACAACTGACTTTACTTCtcatgaagaaaaagataacttAAAGAGCATGTTTAATCAAACATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGGGCAGTTCAGATGACTACCAGGCGTTCTTAAAGTGCCTTCATATTTTTAGCAATGGAATAATTAAAAGGAATGATTTACAAAATTTGGTAACTGATTTACTTGGAAAATATCCCGATCTTATGGACGAATTTAATGAATTCTTGGAGCGTTGTGAGAATATTGATGGGTTCCTTGCTGGCGTCGTGAGTAAAAAGTCATTGTCTAGTGATGGTCATTTATCCAAATCACCAAAGTTGGAGGACAAAGATAAAGAACAGAAGCGTGAAATGGAAGTAGctaaagagaaggaaagataCAAGGAAAAGTACATGAAATCCATTCAAGAACTGGACCTGAGTAACTGTCAACGTTCTACTCCCAGCTACCGGCTTCTGCCCAAAGACTATCCAATTCCTATGGCTAGTCAGAGGTCTGAGCTTGGTGCTGAAGTGTTGAATGATCACTGGGTATCTGTGACATCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAGAGCTTGTTTAAATGTGAAGATGACAGATTTGAGCTGGAAATGCTACTAGAATCTGTGAGCTCAGCTGCCAAACGTGTAGAAGAATTGTATAATAGCATCACTGAAAATAAGATCAATGTGGAGACTCCCTTTCATATTGAAGAGCACTTTAGTGCTTTAAATTTAAGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTAGTAGACATACTACGCAAAAATCCGGGTTATGCTCTTCCTGTGATATTGATTCGCCTGAAGCAAAAACAAGATGAGTGGAGTCAGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATATATGCCAAAAATCACTACAAGTCACTTGATCATCGCAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGTGCAAAATCTTTGGTGGCTGAGATCAAAGAGATTAAAGAGAAGCAGCAAAAAGAGGATGATATTCTGCAGTGCATTGCTGCTGGAAATAAGCAGCCACTTTTTCGGCATCTGGAATTTGAATATCCTGATGTTGGGATTCATGAAGATCTATATAAGCTTCTTCGTTATTCATGTGAGGAGCTCTTCTCAAGTAAAGAGctgtttaataaaatgatgagATTTTGGACTGCTTTCTTGGAGCCAATGCTGGGTGTTCCTTCTAGATCTCGTGTGACAGAAAATATGGAGGACGTGAAATCTGAAAATCACGTTCACAATTTTGTGGCATCAAATAGAGGAGATGGTGATGGAAGCCCTCATGGAGACTCTAATATAATGAATTCTAGGGAACCAAAATCTGATAGCAATAATAAAGTTGATGGTAGAGGAACTGAAGTTGAGAATATTCAGGAGAATAGTTTAGTGGCcaatgataaagaaaatggaTCTGTTGATGTTAATCACATTTCTAGACATGATCCTTTGATGGATAAAAGGCAGAAAAATCTTGATAATGCTGATAAAGTCTCTGAATTTGGTAAACAACTTGTCTCTAATGAACAAGGGGCTAACTACAATTCATCAATTGCAATTAAAGGAGAAAACAACCAGAGCAGAACCAGCTTAGAAGTGATGTCAGGCTGCGTCCCTACTCCATCTCGATCTACTCCCACACATGGTGATGACAATTCTGTAGCCAAGTCTCAGGGTATTAATGTACCCTTGGCAGAGGGGTGTGATATTGCAACTCCAATTGAATTGACCAATGGAGTGCTTACTGAAAGCAGTAAAGTAAAAAGCCATGAAGAATCTAGAATTGAAAAGGAGGAGGGTGAGTTATCACCCAATGGTGATTCCGAGCAGGATAACTTTGTTGGCTATGGAGATGCCATTGTACAGTTATCACCTAAATCAAAACACACTActgaaagaaggaaatatcATTCCAGAAGTGGGGAGGAAGATTGCTGCCAAGAGGCTGGATGTGATAATGATGCAGATGCTGATGATGAAGACAGTAAAAATGTTTCTGAAGCTGGTGAAGATGGCTCAGGTAGTGAGTCTGCTGGTGATGAATGCTCCAGGGAAGAGCATGAGGAAGAAGATATAGAACGTGATGATGTTGATGCTAAGACTGAGAGTGAAGGTGAAGCCGAGGGGATGTGTGATGGGCAATCTGCTGGAGGAGATGGCTCATCAATGCCATTATCAGAAAGGTTCCTTTTGTCTGCGAAGCCTCTCACAAAGCATGTATCAGCAGTTTCACatgttgaagaaagaaaagattccaggattttttatggaaatgaTGACTTCTACGTGCTTTTTAGGCTTCATCAAATTCTTTATGAGAGGATCTTAtcagccaaaaaaaattcagtaaGTGCTGAAATGAAGTGGAGAACTGCGAAGGATGCTTTTTCTTCAGATCCTTACTCAAGATTTATCGATGCACTTTACAATTTGCTTGATGGATCTGCTGACAATGCCAAGTTTGAAGATGAATGCCGAGCAATTCTCGGGAATCAGTCATATGTGTTATTCACATTGGAcaagttaatttataaattggtCAGACAGCTTCAAACTGTTACAACGGATGAAATAGACAATAGGCTTCTTCAGTTATATGAGTATGAAAGGTCCAGGAAGCCTGGGAAATTGATTGATTCAGTATATCATGCAAATGCACGCGTCATCCTTcctgaagaaaatatttattgtttggaATGTTCATCTTCCCCTTCCCGAATGTCCTTTCAGCTAATGGACAATATGAGTGAAAAGCCTGAGGTGTATGCTGTGTCTATTGATCCAAATTTTGCCTTTTATCTGTACAATGATTTTCTGTCAGTCTTTCCTGGAAAAAAGGAACCCGAGGGCATAATGCTGCAAAGAAATAAGCGCAAATATGGAGGCGGCTTAGATGAACTTTCTGCCACAAACTCGGCCATGGAAGATGTTCAACTAATTAATGGATTGGAATGTAAGATAGCTTGTAATTCATCCAAGATCTCCTATGTTCTGGACACCGAAGATTTCTTCTTCCGTCCAAGAAGGCAAAGGAAAACAACATCATCAGGGATTACGTCTTCCAAGCATCTTAGGGCGAGAGAGGAAAGATTCCGAAAATTCTTGTCAGTCTCGCAATG 4184 0.3767 MKRTRDEVFSGSGSQFKRPLGPSRGESYGQTQNPAGGSGSGGGIAGGDGGGGGGTTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEALPKKTVEFEEAISFVNKIKRRFQNDEHVYKSFLDILNMYRKEHKDICEVYSEVSSLFEDHPDLLEEFKRFLPDTSATPAHHAPYGRNSLQRFNERSSTEPTMRQMQVAKQRYQQNRHITPQEHDLSVDRHELDDDKAMIKVHRDPRKRVEKERKDRRIHDQDEREPDHDINMQHSPEKKKCVKKAEGFGLTTDFTSHEEKDNLKSMFNQTFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVVSKKSLSSDGHLSKSPKLEDKDKEQKREMEVAKEKERYKEKYMKSIQELDLSNCQRSTPSYRLLPKDYPIPMASQRSELGAEVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFKCEDDRFELEMLLESVSSAAKRVEELYNSITENKINVETPFHIEEHFSALNLRCIERLYGDHGLDVVDILRKNPGYALPVILIRLKQKQDEWSQCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSAKSLVAEIKEIKEKQQKEDDILQCIAAGNKQPLFRHLEFEYPDVGIHEDLYKLLRYSCEELFSSKELFNKMMRFWTAFLEPMLGVPSRSRVTENMEDVKSENHVHNFVASNRGDGDGSPHGDSNIMNSREPKSDSNNKVDGRGTEVENIQENSLVANDKENGSVDVNHISRHDPLMDKRQKNLDNADKVSEFGKQLVSNEQGANYNSSIAIKGENNQSRTSLEVMSGCVPTPSRSTPTHGDDNSVAKSQGINVPLAEGCDIATPIELTNGVLTESSKVKSHEESRIEKEEGELSPNGDSEQDNFVGYGDAIVQLSPKSKHTTERRKYHSRSGEEDCCQEAGCDNDADADDEDSKNVSEAGEDGSGSESAGDECSREEHEEEDIERDDVDAKTESEGEAEGMCDGQSAGGDGSSMPLSERFLLSAKPLTKHVSAVSHVEERKDSRIFYGNDDFYVLFRLHQILYERILSAKKNSVSAEMKWRTAKDAFSSDPYSRFIDALYNLLDGSADNAKFEDECRAILGNQSYVLFTLDKLIYKLVRQLQTVTTDEIDNRLLQLYEYERSRKPGKLIDSVYHANARVILPEENIYCLECSSSPSRMSFQLMDNMSEKPEVYAVSIDPNFAFYLYNDFLSVFPGKKEPEGIMLQRNKRKYGGGLDELSATNSAMEDVQLINGLECKIACNSSKISYVLDTEDFFFRPRRQRKTTSSGITSSKHLRAREERFRKFLSVSQ 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01236 1394 MobiDBLite consensus disorder prediction 1038 1052 - -
Bva04g01236 1394 SUPERFAMILY PAH2 domain 140 211 IPR036600 GO:0006355
Bva04g01236 1394 PANTHER SIN3B-RELATED 11 1383 IPR039774 GO:0003714
Bva04g01236 1394 MobiDBLite consensus disorder prediction 282 316 - -
Bva04g01236 1394 MobiDBLite consensus disorder prediction 771 806 - -
Bva04g01236 1394 ProSiteProfiles PAH domain profile. 58 128 IPR003822 GO:0006355
Bva04g01236 1394 SUPERFAMILY PAH2 domain 54 127 IPR036600 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 812 831 - -
Bva04g01236 1394 Coils Coil 441 461 - -
Bva04g01236 1394 Gene3D Paired amphipathic helix 141 213 IPR036600 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 1002 1020 - -
Bva04g01236 1394 Gene3D Paired amphipathic helix 64 126 IPR036600 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 940 959 - -
Bva04g01236 1394 Pfam Sin3 family co-repressor 476 567 IPR013194 -
Bva04g01236 1394 MobiDBLite consensus disorder prediction 937 1079 - -
Bva04g01236 1394 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 11 1383 - -
Bva04g01236 1394 SMART hdac_interact2seq4b 473 573 IPR013194 -
Bva04g01236 1394 Pfam Paired amphipathic helix repeat 165 209 IPR003822 GO:0006355
Bva04g01236 1394 Pfam Paired amphipathic helix repeat 81 125 IPR003822 GO:0006355
Bva04g01236 1394 Pfam Paired amphipathic helix repeat 363 407 IPR003822 GO:0006355
Bva04g01236 1394 Pfam C-terminal domain of Sin3a protein 1110 1359 IPR031693 -
Bva04g01236 1394 MobiDBLite consensus disorder prediction 889 911 - -
Bva04g01236 1394 Gene3D Paired amphipathic helix 339 412 IPR036600 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 227 253 - -
Bva04g01236 1394 SUPERFAMILY PAH2 domain 344 410 IPR036600 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 1 58 - -
Bva04g01236 1394 MobiDBLite consensus disorder prediction 426 448 - -
Bva04g01236 1394 ProSiteProfiles PAH domain profile. 341 410 IPR003822 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 433 448 - -
Bva04g01236 1394 ProSiteProfiles PAH domain profile. 142 212 IPR003822 GO:0006355
Bva04g01236 1394 MobiDBLite consensus disorder prediction 213 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01236 Bva-Chr4 8689166 8698926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01236 48 161 WRKY Transcription Factor Family AT4G12020 49.123 7.74e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva04g01236 Sin3a_C 2.1e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01236 K11644 - gmx:100807181 1971.05