Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01235 atGGATAGTGGAGATCAGAAATCAAGCAGTGTGgccaacaagaagaaaaatgggtcTTTAAGATCCATTTTCATGCATGCCGATGGCAGAGATTGGTTGTTGATGATCTTAGGCTTTTTCGGAGCCGTGGGAGAGGGATTCTCTACCCCTCTTATTTTATTCGTCAGTAGCCGTTTGATGAACAATATTGGCGGCTCTGGTTCAACGAAAGGAAATGATTTCCTTCATAATATCAATAAGAATGCAGTGTCTATGTGTTATGTAGCGTGTGGCTCTTTCGTCGCGTGCTTTCTCGaGGGTTTTTGCTGGACAAGAACAGGAGAGAGACAAGCTGCAAAAATGAGAGCAAGATACTTGAGAGCAATTCTAAGACAAGAAGTGGCATACTTTGATTTACACGTGACAAGCACATCTGAAGTCATCACCAGCGTCTCAAACGATAGCCTTGTGATTCAAGATGCTCTGAGCGAAAAgGTCCCAAATTTCTTGATGAATTTCTCCATGTTCATTGGGAGCTACATAACAGCTTTTGCAATGCTTTGGAGATTGGCTATTGTGGGGTTCCCCTTCGTGGTCCTTCTAGTGATTCCAGGCTTAATTTATGGAAGAACTTTGATGGAATTGGCAAGGAAGATCAGAGAAGAGTACAACCAAGCTGGAACCATAGCAGAGCAAGCCATATCTTCAATCAGAACCGTTTATTCCTTCGTCGGCGAAAGCAAGACCATTGCTGCTTTCTCAGATGCTCTTCACGGCTCAGTTAAATTGGGATTGAGACAAGGTTTGGCCAAAGGCTTGGCCATCGGAAGCAATGGTGTTGTCTTTGCCATATGGTCTTTCATGTCCTATTATGGCAGCAGACTCGTCATGTACCATGGCGCCCAAGGCGGCACCGTTTTCATGGTTGGAGCAGCCATAGCTGTTGGTGGATTAGCATTAGGTGCTGGTTTATCCAACATGAAGTACTTCTCTGAAGCAAGCTCAGCAGGGGAGAGAATAATGGAAGTGATAAAAAGGGTGCCCAAGATTGATTCCGAAAACAAAGAAGGAGAGATTCTGGAGAAGGTTTCCGGGGAAGTTGAATTCCATCACGTCGAATTCGCATACCCATCAAGGCCAGACAGCATTATTCTGAATGATTTCTGCCTCAGGATTCCGGCGGGGAAGACGGTGGCGCTCGTGGGTGGCAGTGGCTCCGGGAAATCCACGGTGATTTCCCTTCTGCAGAGGTTTTATGACCCCCTTGGGGGAGAGATTCGCGTGGATGGGGTGGCCATTAATAGGCTGCAGCTCAAATGGGTGAGGTCACAGATGGGGCTGGTGAGCCAAGAGCCTGCTCTGTTTGCAACCAGCATTAAGGAGAACATACTTTTCGGGAAAGAGGATGCTACAGATGAAGAGATTGTGGAGGCTGCCAAAGCTTCCAACGctcataatttcattttacagCTGCCTGAAGGATACGATACCCAGGTTGGTGAGAGAGGTGTTCAAATGTCTGGGGGACAAAAGCAGAGGATTGCAATAGCTCGAGCAATTATCAAGAAACCCCGAATTCTTTTATTAGATGAAGCAACCAGTGCGTTAGACTCTGAATCAGAACGTGTCGTTCAAGAAGCTCTAGACAAAGCTGCAGTAGGCCGCACCACGATCATCATTGCTCACCGTTTATCCACCATCCGAAACGCGGATGTCATTGCCGTCGTTCAGAACGGGAAAGTCGGGGAAATGGGGTCACATAATGAGCTCATCCAAAACGACAATGGACTTTACACTTCCCTTGTTCGTCTccaacaaacagagaaatCTAACGGGCAAGACGACACCATCCCCAACCCAAATTCTATCACAAACAGGGACATCAACAACAGTAGTAGTCGTAGGCTCTCTTTGGTGAGTCGTTCTAGCTCTGCCAATTCAATAGCACCCAGTCGAGCTTCATTTGGTGATGAAGATGGGGATGACGTTGGGtgggaagagaagaaatttccTGTTCCATCATTTAAAAGATTGCTTCTTCTAAATCTCCCCGAGTGGAAGCAAGCAAGCTTAGGGTGTTTGAGTGCTGTATTGTTCGGTGCAGTTCAACCAGTTTATGCATTTGCAATGGGTTCCATGatttctgtttattttctaACAGATCATAGTGAGATTAAGGAGAAGACAAGGATATATGCGCTTTGTTTTGCAGGGTTGGCTGTTTTCTCTCTAGTTATTAATATAAGCCAACATTATAGTTTTGCATATATGGGAGAGTACTTGACCAAAAGGGTCAGAGAGAGAATGCTTTCTAAGATCCTCACGTTTGAGGTAGGGTGGTTTGATCAAGATGAGAATGCTAGTGGTGCTGTTTGTTCTAGACTCGCCAAAGACGCCAATGTGGTGAGGTCATTGGTGGGAGATCGAATGGCTCTACTTGTGCAAACTTTCTCAGCCGTGATAATAGCATGCACAATGGGGTTGATAATTGCATGGAGGCTGGCCATTGTTATGATAGCTGTGCAACCCCTTATCATAGTATGTTTCTACACTAGACGTGTCCTCCTCAGGAGCATGTCAAACAAGGCCATCAAAGCCCAAGACCAAAGCAGCAAGCTAGCAGCTGAGGCTGTCTCGAATCTTAGAACCATTACTGCCTTCTCTTCCCAAGATCGAATCCTCAAAATGCTTGAAAAAGCCCAAGAAGGCCCAAGTCGTGAGAGCATTCGCCAATCTTGGTATGCTGGTATTGGGCTTGCTTCCTCTCAAAGCCTTACTTCATGTACTTGGGCCTTGGATTTTTGGTATGGTGGGAAACTCATCTCCCAAGGCTACATCTCTGCTAAAGCATTATTTGAGACCTTCATGATTTTGGTGAGCACAGGCCGTGTCATTGCTGATGCCGGAAGCATGACGACAGACCTTGCGAAGGGCTCTGATGCTGTGGGCTCAGTTTTTGCAGTTCTAGACAAGTGCACCAAGATTGAGCCAGAAGATCCTGAAGGCTACCAGCCCAAAAAGATAATGGGCCAAATTGAATTTCGTGATATCCATTTCTCATACCCAGCGAGGCCCAATGTGATGATTTTTGAAGGGTTCTCTATCAAAATTGAAGCAGGAAAGTCAACGGCACTGGTAGGCCAAAGTGGGTCCGGGAAATCAACCATCATAGGATTAATAGAGAGATTCTATGACCCAATCAAAGGGACGGTAAGCATTGATAGTAGAGATATAAAAACATACAACCTAAGGTCACTGAGAAAACACATTGCTATGGTTAGCCAAGAGCCCACGTTGTTTGCTGGGACCATAAGAGAGAACATTGCATATGGAGCATCTGATAAAGTAGATGAAGCAGAGATGATCGAGGCGGCGAGAATAGCCAACGCTGACGATTTCATTTCAAGTCTTAAGGACGGCTACGATACATTGTGTGGGGACAGAGGGGTGCAACTATCGGGGGGTCAAAAACAGAGAATTGCAATTGCACGAGCTATCCTGAAGAACCCTAAAGTGTTGTTGTTGGATGAAGCCACTAGTGCACTTGACAGTCAGTCAGAGAAGGTGGTGCAGAACGCGCTAGAGCGCGTGATGGTGGGGAGGACAAGTGTGGTGGTGGCCCACAGGTTGAGTACCATACAAAACTGTGATGTAATTGCAGTGTTGGACAAGGGGAAAGTGGTGGAGAAAGGGACCCACTCGTCCTTGTTGGCCAAGGGACCGAGCGGAGCTTATTACTCTTTGGTAAGTCTTCAAAGGAGACCATCCAACAACTG 3755 0.4522 MDSGDQKSSSVANKKKNGSLRSIFMHADGRDWLLMILGFFGAVGEGFSTPLILFVSSRLMNNIGGSGSTKGNDFLHNINKNAVSMCYVACGSFVACFLEGFCWTRTGERQAAKMRARYLRAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDALSEKVPNFLMNFSMFIGSYITAFAMLWRLAIVGFPFVVLLVIPGLIYGRTLMELARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTIAAFSDALHGSVKLGLRQGLAKGLAIGSNGVVFAIWSFMSYYGSRLVMYHGAQGGTVFMVGAAIAVGGLALGAGLSNMKYFSEASSAGERIMEVIKRVPKIDSENKEGEILEKVSGEVEFHHVEFAYPSRPDSIILNDFCLRIPAGKTVALVGGSGSGKSTVISLLQRFYDPLGGEIRVDGVAINRLQLKWVRSQMGLVSQEPALFATSIKENILFGKEDATDEEIVEAAKASNAHNFILQLPEGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQNGKVGEMGSHNELIQNDNGLYTSLVRLQQTEKSNGQDDTIPNPNSITNRDINNSSSRRLSLVSRSSSANSIAPSRASFGDEDGDDVGWEEKKFPVPSFKRLLLLNLPEWKQASLGCLSAVLFGAVQPVYAFAMGSMISVYFLTDHSEIKEKTRIYALCFAGLAVFSLVINISQHYSFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENASGAVCSRLAKDANVVRSLVGDRMALLVQTFSAVIIACTMGLIIAWRLAIVMIAVQPLIIVCFYTRRVLLRSMSNKAIKAQDQSSKLAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWYAGIGLASSQSLTSCTWALDFWYGGKLISQGYISAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFAVLDKCTKIEPEDPEGYQPKKIMGQIEFRDIHFSYPARPNVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPIKGTVSIDSRDIKTYNLRSLRKHIAMVSQEPTLFAGTIRENIAYGASDKVDEAEMIEAARIANADDFISSLKDGYDTLCGDRGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKVVQNALERVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKVVEKGTHSSLLAKGPSGAYYSLVSLQRRPSNN 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01235 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 598 IPR027417 -
Bva04g01235 1251 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Bva04g01235 1251 SMART AAA_5 387 573 IPR003593 -
Bva04g01235 1251 SMART AAA_5 1032 1225 IPR003593 -
Bva04g01235 1251 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524
Bva04g01235 1251 CDD ABC_MTABC3_MDL1_MDL2 1005 1245 - -
Bva04g01235 1251 Gene3D - 995 1250 IPR027417 -
Bva04g01235 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Bva04g01235 1251 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Bva04g01235 1251 SUPERFAMILY ABC transporter transmembrane region 29 344 IPR036640 GO:0005524|GO:0016021
Bva04g01235 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01235 1251 Pfam ABC transporter transmembrane region 35 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01235 1251 Pfam ABC transporter transmembrane region 684 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01235 1251 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Bva04g01235 1251 Gene3D - 358 620 IPR027417 -
Bva04g01235 1251 MobiDBLite consensus disorder prediction 602 622 - -
Bva04g01235 1251 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 20 1248 - -
Bva04g01235 1251 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 1248 IPR039421 -
Bva04g01235 1251 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1242 IPR003439 GO:0005524
Bva04g01235 1251 Gene3D ABC transporter type 1, transmembrane domain 84 979 IPR036640 GO:0005524|GO:0016021
Bva04g01235 1251 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Bva04g01235 1251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1245 IPR027417 -
Bva04g01235 1251 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g01235 1251 Pfam ABC transporter 1025 1173 IPR003439 GO:0005524
Bva04g01235 1251 SUPERFAMILY ABC transporter transmembrane region 662 989 IPR036640 GO:0005524|GO:0016021
Bva04g01235 1251 MobiDBLite consensus disorder prediction 634 653 - -
Bva04g01235 1251 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01235 Bva-Chr4 8646316 8654055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01235 19 1246 Calmodulin-binding Proteins AT2G36910 45.382 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01235 K05658 - gmx:100807709 1954.1