Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01221 ATGGCAATTAAAGGAGGAGCAAACAAGGCCTGTGCTGCTTGCAAGTATCAAAGAAGAAGGTGCTCCAAAGAGTGCCCATTATCTCCCTATTTCCCTGCTGATCAGCCAAAAAAGTTCCAAAATGCCCACCGATTGTTTGGCGTGTCGAATATAATGAAAACACTCAACCAGGTCCACCCTGAGCAGCATGATGAAGCAATGGAATCCATCATGTTTGAATCTGACATGCGCGCAAAGTATCCAGTTCACGGCTGTTTAGGTATCATATGGCAGTATAATAATCAGATCGTTAGACTAGAGGAAGACCTTCGTCATGTCAAAATGCAACTTGCTTTTGTTAAGGATCATTACCAATATCAACTTCCTTATCCAATGCCTCCGTCGCCGCCGGATTGTTCATTAGTGTCGCCGCAGCAATTGCAGTATGGATTGCCAACGACAACAACCGGTGACACTGCAATTCCAATGTACAACCATTACGGTGAATTTCCTATGCTCGATGGGAATGGGGTTGGGGTTTATAATGGAAGTGGTTacattgaaaatgaagatatgATGATGAAACACTTGAGTGTTCAACAGCCTTTTTGTAATGGAATGGCTATGCCTGGGCAACCAAATCTGATGGCAATGCAAGGTTTATCCACTCAACAAGAATTGGATATTAATCCTGCAGACTATGATGACATACCCTTTGATGCAATTGATGATAGACAATCATTTATTGAATGCAAAGAACCATGTGAATCAAGTGCGGAATCTTCCTTCCAAGAGGCAGCACAACATATGGAAAATGTTTCCAAGAATGAACTCAAGAATGCAGCGGCATGCCTCAGTCTAAAAGGATG 848 0.4186 MAIKGGANKACAACKYQRRRCSKECPLSPYFPADQPKKFQNAHRLFGVSNIMKTLNQVHPEQHDEAMESIMFESDMRAKYPVHGCLGIIWQYNNQIVRLEEDLRHVKMQLAFVKDHYQYQLPYPMPPSPPDCSLVSPQQLQYGLPTTTTGDTAIPMYNHYGEFPMLDGNGVGVYNGSGYIENEDMMMKHLSVQQPFCNGMAMPGQPNLMAMQGLSTQQELDINPADYDDIPFDAIDDRQSFIECKEPCESSAESSFQEAAQHMENVSKNELKNAAACLSLKG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01221 282 Coils Coil 89 109 - -
Bva04g01221 282 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 8 164 - -
Bva04g01221 282 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Bva04g01221 282 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 164 - -
Bva04g01221 282 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01221 Bva-Chr4 8454878 8456621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01221 1 114 AS2 family AT3G47870 55.263 1.66e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva04g01221 LOB 1.8e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01221 04 8454878 8456621 Bva04g01221 04 8454878 8456621 ECH