Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01214 ATGGGAAGACTACTGGCGGCAAGTGCAATATTGATCTGCTTGGTTATTTTCGCCATTACAGTTCCATGTCTCGGGGCTGGTCCTGTTGAATATGATGACTTTCACTGGAAACAAGAAGCGGATGCCAAGATAGCAGCTTCAGAGGCCTACGAGCCCAACCCCTTGAATGTCACTTCAGAGCTTAATCTACACGTCCACCTGGCATTGCAGGAGCAAGAGCAGGAGGAGCAGGAGCAGGAGCTGGAAGAGGAGAAGGAGCCGGAGCTGTTGCTGGAGATGATCAATGACACCAGGAGAGACCTGAGGGCTATAAAGAAACCGAAAGGACCATGCAAGGCCACCAATCCAATTGACCGTTGCTGGCGGTGCAAGCCAGACTGGGCCAATGATCGCTTTAAATTAGTCCGATGTGTGAAGGGTTTCGGGCGAAAGACCACCGGAGGACTCGGTGGCCCTATCTACGTGGTGACAGATAACTCCGATGAGGACATGTTGAACCCGAAGCCGGGAACTCTCCGGCATGCAGTGATCCAGGATGGACCATTGTGGATCATCTTCGAGCGGAACATGGTGATCCATCTGAAGCAGGAATTGCTAATATCATCTCACAAGACCATTGATGGCCGTGGAGCCAATGTCCAGATTAAGAGTGGAGCTGGACTTTCCATATTCAACAATCGAAACATTATCATTCATAATCTTCGcattaagaaaatcaaatctgAATGTGGTGATGACATTGCTGATGCTTGGAACCATCATGGAATTAGAACAAAGAGTGATGGAGATGCCATTTCTATCTGGGGTAGTAGTAACATTTGGATTGATCATATTTCCATGTCCGATTGTGAGGATGGTCTTATTGATATCATTCAGGGTTCTACTGCTATCACCATCTCTAACTGCCACATGACCCATCACAATGATGTGATGTTGTTTGGAGCAAGTGATACCTTCGAAGGTGACAAAATAATGCAGGTGACAGTGGCATTCAACCATTTTGGACAAGGATTGATTCAGAGGATGCCCAGATGCAGATGGGGTTTTGTTCACGTTGTGAACAATGACTACACTCATTGGCAGATGTATGCAATTGGTGGTAGCTCTGGCCCAACCATTCTCAGCCAGGGCAACCGATTCATTGCTCCGCCCAACGAGGCTGCGAAGGAGATCACACACAGAGGCTATGCACCAGAATCAGTGTGGAGTAAGTGGCAATGGAGATCAGAGATGGACCTGCTCATGAATGGAGCTACTTTTCTTGAGTCTGGAGCACCATTCAATCATCATTTTCCATTTCCCAAAGGCAACTTTGTGAAACCAAGAGATGGAAAATTTGTTACTAGGCTGACAAGATACACTGGTGCACTCTCCTGCAAGGTTGACAAGCCTTGTTA 1397 0.4681 MGRLLAASAILICLVIFAITVPCLGAGPVEYDDFHWKQEADAKIAASEAYEPNPLNVTSELNLHVHLALQEQEQEEQEQELEEEKEPELLLEMINDTRRDLRAIKKPKGPCKATNPIDRCWRCKPDWANDRFKLVRCVKGFGRKTTGGLGGPIYVVTDNSDEDMLNPKPGTLRHAVIQDGPLWIIFERNMVIHLKQELLISSHKTIDGRGANVQIKSGAGLSIFNNRNIIIHNLRIKKIKSECGDDIADAWNHHGIRTKSDGDAISIWGSSNIWIDHISMSDCEDGLIDIIQGSTAITISNCHMTHHNDVMLFGASDTFEGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWQMYAIGGSSGPTILSQGNRFIAPPNEAAKEITHRGYAPESVWSKWQWRSEMDLLMNGATFLESGAPFNHHFPFPKGNFVKPRDGKFVTRLTRYTGALSCKVDKPC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01214 465 Pfam Pectate lyase, N terminus 30 101 IPR007524 GO:0030570
Bva04g01214 465 Coils Coil 64 87 - -
Bva04g01214 465 Pfam Pectate lyase 196 380 IPR002022 -
Bva04g01214 465 PANTHER PECTATE LYASE 18-RELATED 7 465 IPR045032 GO:0030570
Bva04g01214 465 Gene3D - 114 458 IPR012334 -
Bva04g01214 465 PANTHER PECTATE LYASE 7 465 - -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 197 213 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 363 382 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 436 459 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 405 429 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 161 186 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 261 282 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 137 154 IPR018082 -
Bva04g01214 465 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Bva04g01214 465 SUPERFAMILY Pectin lyase-like 115 456 IPR011050 -
Bva04g01214 465 SMART amb_all 189 386 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01214 Bva-Chr4 8350559 8353260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01214 11 465 Polysaccharide Lyase AT5G15110 53.617 3.06e-177 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01214 K01728 - gmx:100780236 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01214 04 8350559 8353260 Bva05g00449 05 2214896 2216747 ECH
Bva04g01214 04 8350559 8353260 Bva04g01214 04 8350559 8353260 ECH
Bva03g01278 03 12483559 12485736 Bva04g01214 04 8350559 8353260 ECH
Bva08g01443 08 7564919 7567839 Bva04g01214 04 8350559 8353260 ECH
Bva11g01031 11 11916025 11921128 Bva04g01214 04 8350559 8353260 ECH