Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01213 ATGAAAATGTATTCAGGGGGGATCTTATGGAAGAGACAGGGTGGTGGTAAGGCAATTGAAGTTGATAAAGCTGACATAATGGGAGTGACGTGGATGAAGGTTCCAAGAACTAATCAGCTGGGTGTTTGGATCAAAGATGGCTTGTACTATAAGTTCACTGGGTTCCGTGATCAGGATCTTGCAACTTTGACTaccttttttcaaaatacttgTGGCATAACACCAGAGGAAAAACAGCTTTCTGTTAGTGGGCGTAGCTGGGGGGAGATTGATCTAAATGGAAATATGCTGACTTTCTCGGTTGGTTCAAAGCAAGCTTTTGAGAAAGATTCATTGATGGAGATAAGTTTTCATATTCCGAATTCCAACACCCAGTTCGTTGGCGATGAGAATCATCCACCTGCTCAGGTTTTCCGTGACAAGATCATGTCTATGGCAGATGTTGGTCCTGGAGGTGAAGATGCTGTTGTTACATTTGATGGTATCGCAATCCTTACACCATGGCATATCGAAAGTTTTTCTTGTGAATTTGCTGTATTTGTGCAGTCTTATCAGCCACATACCTTCGTTATTATTAGTCTTGATCCGCCTATTCGTAAAGGGCAAACTCTGTACCCACATATTGTGATGCAGTTTGAAACTggttttgtcgtacaaagcaCCTTGTCATTAAGTGAAGATCTTTACAACTCTAAATACAAGGACAAGTTGGAGCCATCTTATAAGGTAACCCCTTTTCCCTTTGAATTTTTCAGTAAATTTAGAAGCTGTCAAGATGGTTATGCGGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCTACTCTCATTCTTCATGAAGAGTTTGATTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTCATCAGACTGAAAACTGAACAGGAGCATCTCTTCCGTAATATTCAGAGGAATGAATACCATAATTTGTTTGACTTTATCAGTTCAAAGGGCTTGAAGATTATGAACTTAGGAGGTGTCCAGACCACTGATGGTGTGGCCGCTGTTCTGCGGGATGATGTTGATGATGCTGTTGATCCACATCTTGAGCGCATTAAGAATGAAGCTGGAGGAGAGGAGAGTGATGAAGAGGATTCAGATTTTGTTGCTGACAAGGATGATGGTGGTTCTCCAACTGATGACTCTGGAGAAGATGATTCCGATGGCAGTGGAAGTGACCATTTTCAGAAGCCTTCCAAAAGGGAATCAAAGAAGGATCCATCTTCTAAGAGGAAATCTAAAGATGGTGATGAagatgggaaaaagaaaaaggaccCAAATGCACCAAAGAGGGCAATGTCTGGTTTCATGTTCTTCTCACAAATGGAAAGAGAGAATGTCGAGAAAACTAATCCTGGAATTTCATTCACGGAGGTGGGAAAAGTACTCGGggagaaatggaaaaagatgTCAGCGGAGGAGAAGGAACCTCATGAAGCCAAAGCTCGCGCAGATAAGAAACGATATAGGGATGAGATTAGTGGCTATAAGAATCCACAGCCAATGAATGTAGATTCAGGAAATGAATCAGACAGTGCCTA 1628 0.398 MKMYSGGILWKRQGGGKAIEVDKADIMGVTWMKVPRTNQLGVWIKDGLYYKFTGFRDQDLATLTTFFQNTCGITPEEKQLSVSGRSWGEIDLNGNMLTFSVGSKQAFEKDSLMEISFHIPNSNTQFVGDENHPPAQVFRDKIMSMADVGPGGEDAVVTFDGIAILTPWHIESFSCEFAVFVQSYQPHTFVIISLDPPIRKGQTLYPHIVMQFETGFVVQSTLSLSEDLYNSKYKDKLEPSYKVTPFPFEFFSKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEFDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGGVQTTDGVAAVLRDDVDDAVDPHLERIKNEAGGEESDEEDSDFVADKDDGGSPTDDSGEDDSDGSGSDHFQKPSKRESKKDPSSKRKSKDGDEDGKKKKDPNAPKRAMSGFMFFSQMERENVEKTNPGISFTEVGKVLGEKWKKMSAEEKEPHEAKARADKKRYRDEISGYKNPQPMNVDSGNESDSA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01213 542 CDD PH2_SSRP1-like 254 353 - -
Bva04g01213 542 Gene3D High mobility group box domain 449 540 IPR036910 -
Bva04g01213 542 MobiDBLite consensus disorder prediction 379 466 - -
Bva04g01213 542 MobiDBLite consensus disorder prediction 498 542 - -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 107 168 - -
Bva04g01213 542 Pfam Histone chaperone Rttp106-like 262 351 IPR013719 -
Bva04g01213 542 MobiDBLite consensus disorder prediction 417 458 - -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1 179 540 - -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1 2 108 - -
Bva04g01213 542 MobiDBLite consensus disorder prediction 528 542 - -
Bva04g01213 542 Gene3D - 152 252 - -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1 107 168 - -
Bva04g01213 542 MobiDBLite consensus disorder prediction 498 523 - -
Bva04g01213 542 Gene3D - 1 85 IPR011993 -
Bva04g01213 542 SMART Rtt106_2 260 353 IPR013719 -
Bva04g01213 542 SMART hmgende2 457 527 IPR009071 -
Bva04g01213 542 PRINTS Structure-specific recognition protein signature 189 205 IPR000969 GO:0003677|GO:0005634
Bva04g01213 542 PRINTS Structure-specific recognition protein signature 312 328 IPR000969 GO:0003677|GO:0005634
Bva04g01213 542 PRINTS Structure-specific recognition protein signature 328 346 IPR000969 GO:0003677|GO:0005634
Bva04g01213 542 Pfam HMG (high mobility group) box 458 526 IPR009071 -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 179 540 - -
Bva04g01213 542 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 458 526 IPR009071 -
Bva04g01213 542 Gene3D - 253 359 IPR011993 -
Bva04g01213 542 Pfam POB3-like N-terminal PH domain 1 76 IPR035417 -
Bva04g01213 542 SUPERFAMILY PH domain-like 153 352 - -
Bva04g01213 542 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 2 108 - -
Bva04g01213 542 CDD HMGB-UBF_HMG-box 458 523 - -
Bva04g01213 542 SUPERFAMILY HMG-box 449 529 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01213 Bva-Chr4 8342403 8347361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01213 454 526 ARID Transcription Factor Family AT1G04880 34.247 2.92e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva04g01213 Rtt106 2.8e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01213 K09272 - zju:107415606 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01213 04 8342403 8347361 Bva04g01213 04 8342403 8347361 ECH