Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01204 ATGGCAAATTTCCCACCTTCTTCTCATAGTTTCATGTTTCAAACCCATGAAGATCACCATGACCACCTTCCTTCTACCACTTCCAATGTTCTCCCTTCACTGCCACCCCAACACTTCCATGGTGGTGCTTGTTTCATGATGAAGCGATCCATGTCATTTTTGGGGATCGAGAACAAGTGTGACCCAGAAGTGCATGGAGATGATGAATTGTCAGATGATGGATGCCAGATTGgggagaagaagaggaggtTGAGTTTGGAACAGGTTAAAGCACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAGCCAGAGAGGAAAATGCAGTTGGCTAAGGCTCTAGGTTTGCAGCCAAGACAGATCGCTATATGGTTCCAGAATAGGAGGGCCAGGTGGAAAACGAAGCAGTTGGAGAAAGAATATGAAGCGCTCAAGAAACAGTTTGAAGCAGTCAAAGCAGATAATGATACCCTTCAAGCTCAGAACATGAAACTACATGCAAAGTTGCAAGCTCTAAGAGGAGGAGAGTGCTTTGAAGCTGGAACGTTCAGCCTTAAGAAAGAAACTGAGGGTTCTTGGAGCAATAGAAGTACTGAGAATACCTCAGACACCAATTTGGATCTTTCAAGAACACCAGTTATAAACAGTCCTATCTCTTCTCATCATcagaatattaaaaatcttCTACCCAATTCCATAAAGCCCACAGGCATAACTCAACTCCTTCAGTGCTCATCAAGATCTGATCCTCAAGACGAGAACTTCAACATGTTTCGCAGCGTGGATGAGCAGCAAAACTTCTGGACATGGCCAGAACAGAACCATTTCCACTG 833 0.425 MANFPPSSHSFMFQTHEDHHDHLPSTTSNVLPSLPPQHFHGGACFMMKRSMSFLGIENKCDPEVHGDDELSDDGCQIGEKKRRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAVKADNDTLQAQNMKLHAKLQALRGGECFEAGTFSLKKETEGSWSNRSTENTSDTNLDLSRTPVINSPISSHHQNIKNLLPNSIKPTGITQLLQCSSRSDPQDENFNMFRSVDEQQNFWTWPEQNHFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01204 277 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 274 - -
Bva04g01204 277 MobiDBLite consensus disorder prediction 189 210 - -
Bva04g01204 277 CDD homeodomain 80 136 IPR001356 GO:0003677
Bva04g01204 277 SMART HOX_1 78 139 IPR001356 GO:0003677
Bva04g01204 277 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Bva04g01204 277 Gene3D - 74 147 - -
Bva04g01204 277 Pfam Homeodomain 80 133 IPR001356 GO:0003677
Bva04g01204 277 Pfam Homeobox associated leucine zipper 135 174 IPR003106 GO:0006355|GO:0043565
Bva04g01204 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 274 IPR045224 GO:0003700
Bva04g01204 277 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Bva04g01204 277 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Bva04g01204 277 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Bva04g01204 277 SUPERFAMILY Homeodomain-like 66 137 IPR009057 -
Bva04g01204 277 Coils Coil 127 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01204 Bva-Chr4 8246244 8248499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01204 4 272 Homeobox Transcription Factor Family AT3G01220 49.818 1.14e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva04g01204 Homeodomain 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01204 K09338 - gmx:100790803 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01204 04 8246244 8248499 Bva04g01204 04 8246244 8248499 ECH