Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01199 ATGGCTTCCGATCTCGAAGTGCAGGCCAACGATGCGTTCATCGACGAGAACTTTGAGCTCGCCGTGGAATTGCTCGGTCAAGCTATTGATCTCAACCGTAATAACGCCGAGCTCTATGCTGACCGTGCCCAAGCCAACATCAAACTCAACAATTTCACTGAGGCTGTTGCGGACGCAAACAGGGCAATTGAATTGAATCCTAAACTATCAAAAGCATATTATCGCAAAGGCCTTGCATGCATCAAGCTTGAGGAATATCAAACTGCTAAAACTGCTTTGGAGTCAGGTGCTTCATTAGCACCAGGAGATGCAAGATTCACTAATTTGATCAAAAAATGTGATGAGCTCATTGCGGAAGAGAATCGTACCATCCTTAAACAGGAAAAGACTACCTCAAAGGATATATCTGTGGATGATGTTCAGCCAGTGAATGATCCTTCAAGGCAGGTGGTTGCATCACCACCTAAACCAAAATACAGGCACGAATTCTACCAGAAGCCTGATGAGGTGGTTGTGACTGTATTTGCAAAGGGTGTCCAAAAGAGCTGTGTTTCTGTTGAATTTGGTGATCAAATACTGAGTGTCAGAATTGATGTCCCTGGTGAAGATGCTTATAATTTTCAACCTCGCTTGTTTGGCAAGATAATACCTGCCAGAAGTAGATATGAGGTTTTGTCCACCAAAATTGAAATTCGCCTACCAAAAGCTGAGCCAATTCACTGGACATCTCTAGAATACAGCAAGGAAGGTGCAGTTCCACAAAGGATTAATGTGTCTTCAGTTGCTAGTAGTCAAAGACCTGCATATCCATCCTCAAAACCAACCAGAGTAGATTGGGATAAGCTTGAAGCTCAGGTTAAGAAAGAGgagaaagaagaaaaacttgaCGGTGATGCTGCTTTGAACAAATTTTTCCGCGATATTTATCAAGATGCGGATGAAGAAACAAGAAGGGCAATGAGAAAGTCATTTGTTGAGTCAAATGGAACAGTGCTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTTGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAGAAATGGGAGTACTG 1079 0.4245 MASDLEVQANDAFIDENFELAVELLGQAIDLNRNNAELYADRAQANIKLNNFTEAVADANRAIELNPKLSKAYYRKGLACIKLEEYQTAKTALESGASLAPGDARFTNLIKKCDELIAEENRTILKQEKTTSKDISVDDVQPVNDPSRQVVASPPKPKYRHEFYQKPDEVVVTVFAKGVQKSCVSVEFGDQILSVRIDVPGEDAYNFQPRLFGKIIPARSRYEVLSTKIEIRLPKAEPIHWTSLEYSKEGAVPQRINVSSVASSQRPAYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYQDADEETRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01199 359 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Bva04g01199 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Bva04g01199 359 Pfam CS domain 160 235 IPR007052 -
Bva04g01199 359 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Bva04g01199 359 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Bva04g01199 359 Gene3D - 152 259 IPR008978 -
Bva04g01199 359 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 359 - -
Bva04g01199 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Bva04g01199 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Bva04g01199 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Bva04g01199 359 ProSiteProfiles SGS domain profile. 268 359 IPR007699 -
Bva04g01199 359 Pfam SGS domain 278 357 IPR007699 -
Bva04g01199 359 SUPERFAMILY HSP20-like chaperones 154 250 IPR008978 -
Bva04g01199 359 SUPERFAMILY TPR-like 5 114 IPR011990 GO:0005515
Bva04g01199 359 Pfam Tetratricopeptide repeat 14 75 - -
Bva04g01199 359 Coils Coil 42 62 - -
Bva04g01199 359 CDD p23_CS_SGT1_like 162 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01199 Bva-Chr4 8183312 8189408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01199 1 100 U-box Gene Family AT3G07370 29.000 1.61e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01199 K12795 - twl:119981914 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01301 03 12673636 12678294 Bva04g01199 04 8183312 8189408 ECH
Bva04g01199 04 8183312 8189408 Bva04g01199 04 8183312 8189408 ECH