Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01197 ATGGACGATAACTGGGATCTCCATGCCATTGTTCGAAGTTGCCAATTCCTCACCTCCGCCGCCGACGGCCAAACCCCACCCATCACCCCAGCCGTCGAAGCCGGCGGCGGGAATCCGTCGTCTGAAGACGCTTTATCTTGCTTGGCCTCGTTAACTTTCGAGGAAGAAAATGGCCCATTCTCTTATCCAGCTGTGCAGCCAAATGGGTTTCAAGAGCTTGACCAAGTGGCGAAGACAATTTTCGCCACCAATGCTGCAGCCTCGGTGGCCCCCACAGTTCCCGGTGGTTTTGCTATCCATCACAGTCCGTCTTTTACTGATTTTGCTAGATCCGTTTATGGACAAAACCAACCCCAACAGGGCGGCCAATGCCACCCTCCGGTGCCTCTGCTGCCAACTAGCAACCCGCCGCGCCCGCTTCTTATACCTGCAGCAGGTTCTAATCCTGCTGTTGAAATATACCATTACCCACCCCAACCCCAACGAAATATGAATCCTTCCCGGTTTGCTTTGCCAAACAGACCACTACCTCACTCTTGTTGCAGAACAAGAAGAAGAAGGTTCCTGCAGAAAAAACTGGTTTGCCAGGTGTCGGCAGATGACGTCTCCACCGATGCGTGGGCTTGGAGAAAATATGGACAGAAACCCATCAAGGGTTCTCCTTTTCCAAGgAATTATTACAGATGCAGCAGCTCCAAAGGGTGTGGGGCCCGAAAACATGTGGAACGAAGCACAACTGAACCCGGCATGTACGTTGTGACCTACGCCGGAGACCACACCCATCCACTGCCTGCTCATCGGAACTCACTCGCCAGCATTAACAGGAATACTAGGATAGCCATTTGCCCGAACCCTTACCCGTACCCTGTCGGAACCGGGTTACCCGTTGTAGCACCGCCAACAGTACCACCGAAGAATGAAGCAAGGCCGTCCGGCGACCAAATATCTACAAATGACACCGACTGGGACATGGATATGGAGCTGGCCTCTGATGATGACGACGTTCTCGTACCCAACATGGCGGCCTTTGACAATGATGTGTTCTTCGACGTGGATCAACTCTGCAGCGACGGTGCCAGCACCAGCAAGCATGCAGGCGGCTCGTCTCCGAGTCAACCCGCTTA 1124 0.5356 MDDNWDLHAIVRSCQFLTSAADGQTPPITPAVEAGGGNPSSEDALSCLASLTFEEENGPFSYPAVQPNGFQELDQVAKTIFATNAAASVAPTVPGGFAIHHSPSFTDFARSVYGQNQPQQGGQCHPPVPLLPTSNPPRPLLIPAAGSNPAVEIYHYPPQPQRNMNPSRFALPNRPLPHSCCRTRRRRFLQKKLVCQVSADDVSTDAWAWRKYGQKPIKGSPFPRNYYRCSSSKGCGARKHVERSTTEPGMYVVTYAGDHTHPLPAHRNSLASINRNTRIAICPNPYPYPVGTGLPVVAPPTVPPKNEARPSGDQISTNDTDWDMDMELASDDDDVLVPNMAAFDNDVFFDVDQLCSDGASTSKHAGGSSPSQPA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01197 374 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva04g01197 374 Gene3D WRKY domain 189 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva04g01197 374 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 367 - -
Bva04g01197 374 SUPERFAMILY WRKY DNA-binding domain 198 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva04g01197 374 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva04g01197 374 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 367 IPR044810 GO:0003700
Bva04g01197 374 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01197 Bva-Chr4 8169888 8171305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01197 182 287 WRKY Transcription Factor Family AT5G52830 61.321 8.61e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva04g01197 WRKY 2.3e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01303 03 12690280 12692011 Bva04g01197 04 8169888 8171305 ECH
Bva08g01861 08 12592000 12593690 Bva04g01197 04 8169888 8171305 ECH
Bva08g00110 08 575041 575385 Bva04g01197 04 8169888 8171305 ECH
Bva04g01197 04 8169888 8171305 Bva04g01197 04 8169888 8171305 ECH