Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01190 ATGGCCTCTGCATTCTCCACATCTGTTTTGATAGTATTAGTGATTCTCCCTGGTGCGTCTAATTCTTCATCCGCAgtggatgaagaagaaaaggctTTGCTCCAAAGCCATTGGTGGAGTGGCAAAAACATCTCAAGCCGTTGCGAGTGGCACGTTATTGTGTGCAACGATGCTGGAAGCATCacaaatatttctctttcaagTTTCCATTACCAGTCCTCTTCTCCACCTCAGTTTCAAGCCATGAACTGGACTGCATTCCCAAATTTAGTCAATCTATATCTGAGTCAAATCAATCTATCTGGAATCATCCCTGAGAATATTGGTGCACTTACAAATCTCACCCGTCTCGAGATTTCCAAAAATAATCTCACAGGTCAGCTCCCTCGTTCAATTTCAAACCTCATTCACCTTGTGATGCTTGATGTTTCTCACAATGGTTTGAGTGGATCAATCCCTTCTAGTTTGGGCAATTTGAAAAATCTTCTTAACCTAGAATTAAGCTTAAACAAGTTAAGCGGATCCATCCCTTCTACTCTGGGCAATTTGTCTAGTCTCAATAATTTGCAGCTTTCATATAATTCCTTAACTGGTGAGATACCTAAAGAAATAGGGCAGTTAAACAATCTGGTTAGCTTGTATGTTGATGGCAACATGTTGTCTGGTCCTATTCCTCTAGAAATTGGTAAGTTAAAAAACTTGACTGTGTTAAACCTTTCTTATAACAATCTCACAGGTCTAGTTCTACCTACCTTAGGGAACTTAACCAATTTGAAACATCTTGatcttaaaagaaatcatcTCCAAGCTCCTTTTCCAATAGGGAACTTGAAGAATTTAGAATATCTAGATGTTTCTTATAACAAACTTACTGGTCCGATCCTTTCTAACTTTGCTAGTTTATCTAGTTTAATATCCTTGTTCCTTTCTTACAACCAAATTAATGGATTCATTCCTcaagaaattggaaatttaAAGTGTTTGACTGATCTGTATCTTTCTAACAACAATCTCAAAGGTACAGTTCCATCCACTTTGCAAAAGTTAACCAATTTGGAATATCTGGATCTTTCTGTAAATAATCTCCAGGGTTCTATTCCATTATCTTTGTATGACTTAACTCCCTTGAGAATTTTAGATTTGTCTTTAAATCAAATCAGTGGTaccctaaatcctaaaattgaaaatttgaaatgtctGTCTAATATaaacttatcaaataataaaatctttggTAGGATACCAAgtgaaattggaaatttttcaTGGTCTGTTCGTATTGACTTTAGCCATAACATGCTTAGTGGAGAGATACCCTCAAACTTGTGTAATCAAAGTTATTTGTATCTCAGCTATAATAAATTCAGTGAGAAGGCAGTGTCAGAATTCAATTCTTTCTGTGGGTTAAATGGATCCAGTTCTAGAACCAACTCAGCAAAGCGATCAATGGAGATCTTCATTCCCATTACAAGTTTCTTTGTCATCCTAATGGCGGCCTGGTTCGTTTCTCCGTGCGTTGCTAAAAAGAAGGAATCTGAGGAGAGACGAGTAAAGAAAGGGGATGTGTTTTCAATTTGGAACTATGATGGTAAAATTGCTTATGAAGATATTATTGAAGCAACTGAAGACTTCGACATCAAGTATTGCATTGGCACCGGTGCTTATGGTAGTGTTTATAGAGCACAGCTTCCTAGTGGCAAAATTATTGCGTTGAAGAGACTCCACCAATTAGAATCTCTAGAGCCATCATTGGATAGACATTTCCAGAATGAAGTCAAAATGTTGACCTCAGTTCGTCACAGAAACATTGTCAAGCTTTATGGTTTTTGTTTGCACAATAGTTGCAAGTTTTTGGTGTGTGAGTATATGGAAAAAGGAAGCTTACTTCAGGTTTTGAGCAATGCTGAAGAAGCCAAGGAGATGAGCTGGAGCAAAAGGGTGAATATAATCAAAGGAATAGCAAATGCATTGTTTTATATGCATCATGATTGTGCTTCCACAATTCTCCATCGAGACATATCCAGTagtaatattttgttgaaCTCAGAATTGGAGGCATTTGTCTCAGACTTTGGCACTGCTAGAATCCTTGATACTAATTCCTCCAATCAAACTCTACTTGTTGGCACTATTGGATATGTTGCTCCAGAGCTTGCATATACATTGAGTGTGACTGAAAAATGTGACATTTATAGCTTTGGAGTGGTGACTCTAGAAACAATAATGGGAAGGCATCCAGGAGAGTTCATTTCCTCTTGGCAAAATTCTTGTGTTCAAAATTTGCTGTTGAAAGATATATTGGACTCTCGTCTTCCTCTTCCTTCCTTTAGGAAAGATGCCAAAGATGTGCTTCTAGTGGTGACACTCGCTTTGTCTTGCCTGCATACTGATCCGAGATGTCGACCATCAATGAAGGATGTTGTTAAGGAGTTTCTTGTCTCAAAGCCACCATTGATGCTACCTTTCAAAGACATTTCAATTCAGCAGTTGATGAATCAAGAATcaatctttcaaaaata 2519 0.3557 MASAFSTSVLIVLVILPGASNSSSAVDEEEKALLQSHWWSGKNISSRCEWHVIVCNDAGSITNISLSSFHYQSSSPPQFQAMNWTAFPNLVNLYLSQINLSGIIPENIGALTNLTRLEISKNNLTGQLPRSISNLIHLVMLDVSHNGLSGSIPSSLGNLKNLLNLELSLNKLSGSIPSTLGNLSSLNNLQLSYNSLTGEIPKEIGQLNNLVSLYVDGNMLSGPIPLEIGKLKNLTVLNLSYNNLTGLVLPTLGNLTNLKHLDLKRNHLQAPFPIGNLKNLEYLDVSYNKLTGPILSNFASLSSLISLFLSYNQINGFIPQEIGNLKCLTDLYLSNNNLKGTVPSTLQKLTNLEYLDLSVNNLQGSIPLSLYDLTPLRILDLSLNQISGTLNPKIENLKCLSNINLSNNKIFGRIPSEIGNFSWSVRIDFSHNMLSGEIPSNLCNQSYLYLSYNKFSEKAVSEFNSFCGLNGSSSRTNSAKRSMEIFIPITSFFVILMAAWFVSPCVAKKKESEERRVKKGDVFSIWNYDGKIAYEDIIEATEDFDIKYCIGTGAYGSVYRAQLPSGKIIALKRLHQLESLEPSLDRHFQNEVKMLTSVRHRNIVKLYGFCLHNSCKFLVCEYMEKGSLLQVLSNAEEAKEMSWSKRVNIIKGIANALFYMHHDCASTILHRDISSSNILLNSELEAFVSDFGTARILDTNSSNQTLLVGTIGYVAPELAYTLSVTEKCDIYSFGVVTLETIMGRHPGEFISSWQNSCVQNLLLKDILDSRLPLPSFRKDAKDVLLVVTLALSCLHTDPRCRPSMKDVVKEFLVSKPPLMLPFKDISIQQLMNQESIFQK 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01190 839 SMART LRR_sd22_2 159 185 - -
Bva04g01190 839 SMART LRR_sd22_2 111 137 - -
Bva04g01190 839 SMART LRR_sd22_2 349 370 - -
Bva04g01190 839 SMART LRR_sd22_2 277 300 - -
Bva04g01190 839 SMART LRR_sd22_2 301 327 - -
Bva04g01190 839 SMART LRR_sd22_2 207 236 - -
Bva04g01190 839 SMART LRR_sd22_2 373 399 - -
Bva04g01190 839 Gene3D Ribonuclease Inhibitor 22 174 IPR032675 -
Bva04g01190 839 Gene3D Ribonuclease Inhibitor 366 482 IPR032675 -
Bva04g01190 839 SMART LRR_typ_2 301 324 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 231 255 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 111 134 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 183 207 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 349 373 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 135 159 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 325 348 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 397 421 IPR003591 -
Bva04g01190 839 SMART LRR_typ_2 277 300 IPR003591 -
Bva04g01190 839 Gene3D Ribonuclease Inhibitor 272 365 IPR032675 -
Bva04g01190 839 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 31 830 - -
Bva04g01190 839 ProSiteProfiles Leucine-rich repeat profile. 233 256 IPR001611 GO:0005515
Bva04g01190 839 Pfam Protein kinase domain 548 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01190 839 Pfam Leucine Rich Repeat 233 255 IPR001611 GO:0005515
Bva04g01190 839 Gene3D Transferase(Phosphotransferase) domain 1 623 816 - -
Bva04g01190 839 ProSitePatterns Tyrosine protein kinases specific active-site signature. 668 680 IPR008266 GO:0004672|GO:0006468
Bva04g01190 839 ProSiteProfiles Protein kinase domain profile. 544 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01190 839 SUPERFAMILY L domain-like 46 319 - -
Bva04g01190 839 Pfam Leucine Rich repeat 349 364 IPR001611 GO:0005515
Bva04g01190 839 Gene3D Phosphorylase Kinase; domain 1 504 622 - -
Bva04g01190 839 SUPERFAMILY L domain-like 275 458 - -
Bva04g01190 839 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 31 830 - -
Bva04g01190 839 PRINTS Leucine-rich repeat signature 234 247 - -
Bva04g01190 839 PRINTS Leucine-rich repeat signature 277 290 - -
Bva04g01190 839 Gene3D Ribonuclease Inhibitor 175 271 IPR032675 -
Bva04g01190 839 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Bva04g01190 839 Pfam Leucine rich repeat 88 148 IPR001611 GO:0005515
Bva04g01190 839 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Bva04g01190 839 SUPERFAMILY Protein kinase-like (PK-like) 525 811 IPR011009 -
Bva04g01190 839 Coils Coil 838 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01190 Bva-Chr4 8120338 8122962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01190 87 716 Receptor kinase-like Gene Family AT4G08850 38.235 1.28e-142 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva04g01190 Pkinase 7.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01190 - - qsu:112024920 738.799