Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01188 ATGGTGTCCAAAAACCCAAACCCAGCAGAGGGCTTCTACCTGGATCCCAGTGCCATGGCGCTGCCCGGACTCGGTCCCTTTGCCTCGGTAACTACTGCTGCTACCACCACGGCGTCCGCCACAAATTCATCGGAGGAACTAGCAAAGAAGATCCGGAAACCATACACTATTACCAAGTCTAGGGAGAGCTGGAGCGAACCCGAGCATGACAAGTTCCTTGAAGCTCTCCAACTCTTTGACCGAGACTGGAAAAAGATTGAAGCATTCGTTGGATCTAAGACAGTAATACAGATACGCAGTCATGCACAGAAATACTTCCTAAAAGTTCAGAAGAATGGGGCAAGTGAACACCTTCCTCCACccagaccaaaaagaaaagctgctCATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAACGCTCTCACAAGTTTCCAGATCTTTTCAGTCTTCTCCTATGCTTGAAACTGGATATATTGTAAAGCCTGATTCCTCAGGAATGCTTAAAACTTCTATTACCAACACTGCAGTGTCCTCCCGGTCAAACAACTCCTTGCAAACAGTCAATTTATTGCATGGTGCAAAAGGGCCAAAAGTTAATAATTGTTGCAGTAGCAGTGAAAGCACTCCCAGAGCACAGCACCTTGGTGAATCTACTGATCAAGGGAAAAATAGCCAGCCATTGAAAGTGCTTCCAGATTTTGCACAAGTATACAGATTCATTGGCAGTGTATTTGATCCATGTGTAACTGGACATCTGCCGAGACTAAAAAAGATGGATCCTATAGATATTGAGACGGTGCTATTGTTGATGAGAAACTTGTCCATCAATTTAACCAGCCCAGATTTTGAGGATCATAGAAGGCTGCTTTCGTCCTATGAGGTGGAGCCTGAGACAAATGTTTATATCAATACAGATGGACTTGTCCTCGATGAGCAGTTGAAGAGTGTTACTTA 959 0.4348 MVSKNPNPAEGFYLDPSAMALPGLGPFASVTTAATTTASATNSSEELAKKIRKPYTITKSRESWSEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGASEHLPPPRPKRKAAHPYPQKASKNAPTLSQVSRSFQSSPMLETGYIVKPDSSGMLKTSITNTAVSSRSNNSLQTVNLLHGAKGPKVNNCCSSSESTPRAQHLGESTDQGKNSQPLKVLPDFAQVYRFIGSVFDPCVTGHLPRLKKMDPIDIETVLLLMRNLSINLTSPDFEDHRRLLSSYEVEPETNVYINTDGLVLDEQLKSVT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01188 319 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Bva04g01188 319 Gene3D - 64 111 - -
Bva04g01188 319 CDD SANT 63 106 IPR001005 -
Bva04g01188 319 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Bva04g01188 319 PANTHER SWI/SNF COMPLEX-RELATED 3 303 - -
Bva04g01188 319 MobiDBLite consensus disorder prediction 202 227 - -
Bva04g01188 319 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Bva04g01188 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Bva04g01188 319 PANTHER PROTEIN REVEILLE 6 3 303 - -
Bva04g01188 319 SMART sant 60 108 IPR001005 -
Bva04g01188 319 MobiDBLite consensus disorder prediction 112 148 - -
Bva04g01188 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01188 Bva-Chr4 8096387 8106870 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g01188 Myb_DNA-binding 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01188 - - qsu:112038319 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01319 03 12820145 12820381 Bva04g01188 04 8096387 8106870 ECH
Bva04g01188 04 8096387 8106870 Bva04g01188 04 8096387 8106870 ECH