Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01176 ATGGACCCTAATGATTATTATACGGATGACAAGTGTCAAAGCAGACTGTATATTGGTAACCTTGACCTAAGAATAACAGAAGCAGCTCTGATTAAAATGTTTTCTCCTTTTGGAAAGATAGTATCAGAGGACTTCTTGTGGCACACTCGTGGCCCGAAACGCGGGGAACCACGAGGTTTTGCTTTCATTCAGTATAGCACAAAAGAGGAAGCCAAATTGGCTAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGGCCATTGGTTGTTCGTCTTGCCAGTGAGAAGTACTTATTGGAAACAGCTGATCAGTCTTCAAAAGCAACAGGCGAAGGGCACAAGATGCACCTTTCCGGTGGCGGCTTGGGACAGACGAGTAGGAGTGCGAAAATAGCTGCGATAAAGAACAAATTGAAGTCCCTAGAGGAGGAAAGCTGTAGCACaaagaagcagaagcaaaCTGACAACATATCTTG 476 0.437 MDPNDYYTDDKCQSRLYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYLLETADQSSKATGEGHKMHLSGGGLGQTSRSAKIAAIKNKLKSLEEESCSTKKQKQTDNIS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01176 158 Gene3D - 11 105 IPR012677 -
Bva04g01176 158 PANTHER RNA-BINDING PROTEIN 18-RELATED 9 154 - -
Bva04g01176 158 CDD RRM_RBM18 15 94 IPR039157 -
Bva04g01176 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 95 IPR000504 GO:0003723
Bva04g01176 158 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Bva04g01176 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 154 - -
Bva04g01176 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 88 IPR000504 GO:0003723
Bva04g01176 158 MobiDBLite consensus disorder prediction 103 125 - -
Bva04g01176 158 SMART rrm1_1 15 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01176 Bva-Chr4 8029246 8030577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01176 14 96 Eukaryotic Initiation Factors Gene Family AT3G16380 38.554 2.74e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01176 K24527 - gmx:100804800 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01176 04 8029246 8030577 Bva04g01176 04 8029246 8030577 ECH