Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01170 atgccTTCATGGTGGGgaaaattatcatcaaaagaaaacaagaagaaagcaagtaaAGAACGATTTATTGATGCATTACACAGAAAATTTAAGATCCCATCTGAAGGTAAATTAAGCAATAGATCTGGAGGATCTCGTAGACATTGCAATGACACAATTTCTGAGAAAGGAGCTCAGTCTCCTGCTGAATCAAGATCTCCTTCTCCCTCCAAAGTTGCAAGGTGTCAAAGCTTTGCTGAAAGGCCTAATGCTCAGCCACTACCACTTCCTTGTCTGCACCCTTCCAGTATAGGCAGAACAGGTTctgaaattattatatcatcaaAGTCAAGACAGGAGAAAGGTTCCAAGTCATCATTATATCTGCCTCTTCCAACGCCTGCCTGCATACGTAGTCGGCTGAACCCAGCAGATTTGGATGGGGATCTGGTCACTGCTTCAATCTCTAGTGAGAGCTCTGCTGATAGTGATGAGCCCGCTGACTCACGTAATCGTAGTCCTCTGGCAACTGACTGTGAGAATGGGACTAGAACTGCTTCAGGCAGCCCTTCTAGCCTGGTACTCAAGGATCAAACAACTAGTGTTCCCCAACCAAATTTAAGAGATGCCAGAAAGCCAGCTAATGTTTTCAGTAATCAGGCATCTCCAACATCACCAAAAGGGAGACCtttaagaaaccatgtgccaAATCTACAGGTTCCCCATCATGGTGCCTTCTTTAGTGCTCCTGACAGCTCCATGTCAAGTCCTTCAAGAAGTCCACTCAGAGCATTTGGCACAGAACAAGTGTTAAACTCTGCATTTTGGGCTGGAAAGCCATTTTCAGAGGTCACTTTGATTGGATCTGGTCACTGCTCGAGTCCAGGTTCTGGTCACAATTCGGGGCATAATTCAATGGGAGGTGATATGTCAGGACAGTTATTTTGGCAACCAAGCAGGGGGAGCCCTGAGTATTCTCCTGTACCTAGTCCCAGAATGACAAGCCCTGGTCCTAGCTCAAGAATTCAGAGCGGAGCTGTCACACCAATTCATCCTAGAGCTGGGGGTACACCAGCTGATTCACAGTCAGGATGGGCAGACGAGGGGAAACAACAGAGTCATCGTCTGCCCCTTCCTCCTTTAACAGTTACCAACCCATCACCCTTCTCTCATTCAAATTCTGCAGCAACATCTCCATCTATGCCAAGAAGTCCTGGAAGAGCAGATAATCCAATGAGCCCTGGCTCACGTTGGAAAAAAGGGAAGTTGCTGGGCAGTGGCACATTTGGACATGTATATGTTGGTTTCAATAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTCACTCTGTTTTCAGATGATGCCAAGTCTAAGGAAAGCGCAAAGCAATTAATGCAGGAAATTGCTCTGTTAAGCCGATTAAGGCATCCCAATATTGTGCGGTATTATGGTTCTGAAACAGTAAATGACAGGCTTTACATCTACCTAGAATATGTATCTGGAGGTTGCATATATAAACTTCTTCAAGAATATGGGCAATTTGGTGAACTGGCTATCCGCAGTTATACCCAACAAATTTTGTCGGGGCTTGCCTACTTACATGCTAAGAATACTGTCCACAGGGACATCAAAGGAGCAAATATACTGGTAGATCCAAATGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACATCAGCTCCGTTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCAGAgGTTATAAGGAATTCTAATGGATGCAACCTTGCCGTGGATATCTGGAGTCTTGGATGCACAGTTTTTGAAATGGCTACGACTAAGCCTCCTTGGAGTCAGTTTGAAGGGGTAGCTGCCATGTTCAAGATTGGTAATAGCAAGGAACTCCCAGCAATCCCAGATCAGCTCTCAGATGAAGGAAAGGATTTTATCAGGAAATGCTTACAACGTAATCCACAAGATCGTCCTTCAGCGAGTGATCTATTGGAGCACCCTTTTGTAAAATGCGCTGCACCACTGGAAAGACCTATTCTGGGCCCTGAAGCTTCAGATCTGGTCCCTGGGATTGTGAATGGAGTGAAATCTCTGGGCGTCGGACAGGGAAGAAACCGTTCAACCTTAGATTCAGATAAACTGTCTATTCATTCTTCTAGGGTTTTGAAAACCAATCCTCATGCCAGTGAAATCTATATTCCAAGGAATACATCTTGCCCGGTCTCTCCCATTGGAAGCCCACTTTTGCAGTCAAGGTCACCGCAGCACTTGAATGGGAGAATGTCTCCCTCTCCTATATCCAGCCCTCGAACTGCTTCTGGTGCATCCACGCCTCTCACTGGTGGTAGTGGTGCCATTCCATTTAGTAATCACCTAAAGCAGTCAGTTTACTTTCCAGAGGGTCTTGGAAGCTTGCCAAAGCCCTCAAACAGTATCTACAATAATAGCCCAGCAGCTGCTGTCCATCATGACTCAAATGTTGATATCTTTCGAGGAATGCAAATGGGGTCTCACATTACTTCAGAACTGGTGAGTGAAAATGATGCTTTAGGGAAGCAGCTTGCAAGGCCTGCTCACACCGAGCCCTATGATGTTCAGTCAATATTGGCTGATCGGGTTTGCCGGCAGCTTCTAGGGGAACAAATTAAGATTGACCCATCTTTGGATCTAAGTCCTAACTCCTTATTGAGCAGAACAAATGGTATATG 2696 0.444 MPSWWGKLSSKENKKKASKERFIDALHRKFKIPSEGKLSNRSGGSRRHCNDTISEKGAQSPAESRSPSPSKVARCQSFAERPNAQPLPLPCLHPSSIGRTGSEIIISSKSRQEKGSKSSLYLPLPTPACIRSRLNPADLDGDLVTASISSESSADSDEPADSRNRSPLATDCENGTRTASGSPSSLVLKDQTTSVPQPNLRDARKPANVFSNQASPTSPKGRPLRNHVPNLQVPHHGAFFSAPDSSMSSPSRSPLRAFGTEQVLNSAFWAGKPFSEVTLIGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPADSQSGWADEGKQQSHRLPLPPLTVTNPSPFSHSNSAATSPSMPRSPGRADNPMSPGSRWKKGKLLGSGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVRYYGSETVNDRLYIYLEYVSGGCIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHITSAPLSFKGSPYWMAPEVIRNSNGCNLAVDIWSLGCTVFEMATTKPPWSQFEGVAAMFKIGNSKELPAIPDQLSDEGKDFIRKCLQRNPQDRPSASDLLEHPFVKCAAPLERPILGPEASDLVPGIVNGVKSLGVGQGRNRSTLDSDKLSIHSSRVLKTNPHASEIYIPRNTSCPVSPIGSPLLQSRSPQHLNGRMSPSPISSPRTASGASTPLTGGSGAIPFSNHLKQSVYFPEGLGSLPKPSNSIYNNSPAAAVHHDSNVDIFRGMQMGSHITSELVSENDALGKQLARPAHTEPYDVQSILADRVCRQLLGEQIKIDPSLDLSPNSLLSRTNGI 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01170 898 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 809 - -
Bva04g01170 898 SUPERFAMILY Protein kinase-like (PK-like) 409 753 IPR011009 -
Bva04g01170 898 MobiDBLite consensus disorder prediction 206 220 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 286 413 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 147 227 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 33 95 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 739 781 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 167 199 - -
Bva04g01170 898 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Bva04g01170 898 SMART serkin_6 411 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01170 898 Gene3D Transferase(Phosphotransferase) domain 1 409 675 - -
Bva04g01170 898 ProSiteProfiles Protein kinase domain profile. 411 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01170 898 MobiDBLite consensus disorder prediction 33 53 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 286 313 - -
Bva04g01170 898 CDD STKc_MEKK1_plant 410 665 - -
Bva04g01170 898 Pfam Protein kinase domain 412 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g01170 898 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 809 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 370 397 - -
Bva04g01170 898 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01170 Bva-Chr4 7948189 7948746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01170 1 888 MAP Kinase Kinase Kinase AT1G63700 57.000 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bva04g01170 Pkinase 8.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01170 K20717 - gmx:100792783 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01367 03 13138425 13145145 Bva04g01170 04 7948189 7948746 ECH
Bva04g01170 04 7948189 7948746 Bva04g01170 04 7948189 7948746 ECH