Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01163 ATGTCTGAATCGGAGGAAGAAAGTCCCGAACTTGCTCCCAAGTCAAAGCCACAGGTGGATCCCGAGTGTGTCATGGAATTCGACCTAGACCTGGAAAGCTCCTGGCCATTCGATCAGATTTCTTATCTGTCCAACCCCATGTCTCCATTTCTTATCCCTCACTCGTCTGAGCAGCCTCCGTCTCCTATCTGGGCTTTCTCGGATGTAGACGATGATAGGCACGCAAGAGTTTCCGCCCCAGCTTTCTCCGATTGCAAGAGATTCTTTTCATataattcaaattcaacaCCTGAAGGGCCAACTGAAAATGATGATGGCAAAAATTTTTTGTCACCCGTTGTGGCTTTGCCATTGCTAGAAAATCCAGATGGGTATTGTCTATTAAAGGAAAGGATGACGCAAGCACTTCGGTATTTCAAAGAGTTGACCGAACAGAATGTCTTGGCTCAGGTTTGGGCACCCGTGAGGAATGGGAATCAGTATGTGCTTACAACTTCAGGGCAACCCTTCGTTCTTGATCCAGATAGCAAGGGACTCAATCAGTATAGAACAGTCTCTCTGAGGTACATGTTTTCTGTGGATGGGGAGAGTGGTGGAATCCAGGGACTTCCAGGTCGTGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCGATGTTCAGTATTACTCTAGTAGTGAATATCCACGCAGAGACCATGCTCAGCACTTCAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCTGGACAATCATGTGTTGGTGTGCTAGAGCTGATAATGACTTCACAGAAGATTAACTATGCCCCAGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAGGAGCTCAAAAATTTTGGACCATTCAAACACACAGATTTGTAATGAAGGACGCCAAAACGCATTTGCAGAGATTTTGGAGATATTGACAGTGGTTTGTGAAACTCATAAGTTACCTCTGGCACAAACATGGGTTCCCTGCAGGCATCGTAGTGTTCTTGCCAATGGTGGTGGTTTGAAGAAGATCTGTTCTAGCTTTGACGGTAGCTGCATGGGACAAGTTTGCATGTCAACAAGTGATGTAGCATTCTATATCATAGATGCTCATCTCTGGGGCTTCCGCGAGGCCTGTCTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGAGCATATTTGTCCCATGACATGTGCTTCTGTGGAAACATTACCTGCTTCTCCAAAACCGAATACCCCTTGGTGCATTACGCACTCATGTTTGGGATAACCAGTTGTTTTGCAATCTGTGTAAGGAGCAGTCATACCAAAAATGATGATTATATACTAGAGTTTTTTCTACCTCCAAGGATCACAGATTTTTATGAACAGAAGGCTTTGTTGGGATCCATATTGGGAACAATAAAACAACATTTCCAGAGTCTTAAGGTTGCTAGCGGTGTAGAACTTGAGGAGTATAGTTTGGTTGAAATAGCAACAAATGAAAGTGTTTGTTCAAGATTTGAATCTATTCCAATTATTCAATCTACCAAATCACCACCTGGACCTGACATCTCAAAAAAGATGGGAGAAATAATGCCACTAGATTCATCAGAGCAGCAAATAATGATGTACTTTGATGACATAAAATGTGAAGGGACTCTTGTTGATAATACAGGTGTATGTCTTGATCAGGTCTCTTCCTTGGAGaccaaaaacataaagaaaccCTCAGAGAGAAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTGCAACGATATTTTGCTGGTAGTCTTAAAGATGCTGCAAAAAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAGCATGGAATATCTCGTTGGCCATCTAGAAAGATAAACAAGGTTAACCGTTCCCTGTCCAAGCTAAAGCGGGTAATGGAATCTGTACAAGGTGCTGAAGGagcatttgatttaaattcgCTCAGTACAAGCCGACTACCAATTGCTGCTGGCTCCTTTCCCGAGCCTCTGAACAATCTCAACAAACAAAGCTCACTAAGCACTGGACCATCAGAAACTCAGGTGAAAGAGAATGAATTGAATGTCTTTCAAGTATCAGAAATGAACAGACAAGTCGGCGTGGAAGATCAATTACTTGGAAGAAGAATTGTAAGTCCAAAGAAAGTGATTCATGACAAAGTTGCCTCCCCTCTGGAGTTCAGTAATGGCCCAAACAGGTATGCAACAAGGAGTGCCTCAAGTGAAGATAGTGCAAATCCTACTTCTCATGGCTCATGCCAAGGTAGTCCCCCAAATGAAAGTTCACCTgcaaaagatatatttattgcAGCCAACAATGAGCAATGTGTTGTGGGAGGAGGATCACCAGAACTCACCGTGCAGCCAACTAATAAACTGAACTCTCGGACTGCATACTCTATTCCTGAGCTTGTGGTGACAGAAGCTCAAGAGACATTTGGAAGAATGCTAATTGAGGATACCGGTAGTTCAAAAGACTTGAGAAATCTGTGCCCTTCAATGGCAGATGCCATTGTGGAGTATCAGATTCCAGAAGCTTCTGGAACTAATCCTTCATGTTCAAATTTGGCTCCCAAGCCCTGCATAAATACACTTGGCAACAAAAAGACAGCTTTAGCAGCTACGAAAGATATGGACAGTGTGACTATAAAAGCATCATACAGAGAAGATATTATAAGGTTTCGGATTTCTTCAACATGTGGTATTCTGGAATTAAAAGAAGAGGTTGCTAAGAGATTGAAACTAGAGTTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTAATAGCCTGCGATGCGGACCTGCAGGAATGCATTGACATCTCAAAGGCATCAAGCACCAAAATCATTAGGCTTTTGGTTCATGACATATCATCCAATCTTGCAAGCTCCTATGATAGCTCAGGGGACTG 2963 0.4212 MSESEEESPELAPKSKPQVDPECVMEFDLDLESSWPFDQISYLSNPMSPFLIPHSSEQPPSPIWAFSDVDDDRHARVSAPAFSDCKRFFSYNSNSTPEGPTENDDGKNFLSPVVALPLLENPDGYCLLKERMTQALRYFKELTEQNVLAQVWAPVRNGNQYVLTTSGQPFVLDPDSKGLNQYRTVSLRYMFSVDGESGGIQGLPGRVFQQKLPEWTPDVQYYSSSEYPRRDHAQHFNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLRSSKILDHSNTQICNEGRQNAFAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKICSSFDGSCMGQVCMSTSDVAFYIIDAHLWGFREACLEHHLQQGQGVAGRAYLSHDMCFCGNITCFSKTEYPLVHYALMFGITSCFAICVRSSHTKNDDYILEFFLPPRITDFYEQKALLGSILGTIKQHFQSLKVASGVELEEYSLVEIATNESVCSRFESIPIIQSTKSPPGPDISKKMGEIMPLDSSEQQIMMYFDDIKCEGTLVDNTGVCLDQVSSLETKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVMESVQGAEGAFDLNSLSTSRLPIAAGSFPEPLNNLNKQSSLSTGPSETQVKENELNVFQVSEMNRQVGVEDQLLGRRIVSPKKVIHDKVASPLEFSNGPNRYATRSASSEDSANPTSHGSCQGSPPNESSPAKDIFIAANNEQCVVGGGSPELTVQPTNKLNSRTAYSIPELVVTEAQETFGRMLIEDTGSSKDLRNLCPSMADAIVEYQIPEASGTNPSCSNLAPKPCINTLGNKKTALAATKDMDSVTIKASYREDIIRFRISSTCGILELKEEVAKRLKLELGTFDIKYLDDDHEWVLIACDADLQECIDISKASSTKIIRLLVHDISSNLASSYDSSGD 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01163 987 MobiDBLite consensus disorder prediction 734 776 - -
Bva04g01163 987 Pfam RWP-RK domain 586 634 IPR003035 -
Bva04g01163 987 Pfam PB1 domain 893 973 IPR000270 GO:0005515
Bva04g01163 987 MobiDBLite consensus disorder prediction 741 773 - -
Bva04g01163 987 SMART PB1_new 892 974 IPR000270 GO:0005515
Bva04g01163 987 CDD PB1_NLP 893 973 IPR034891 -
Bva04g01163 987 MobiDBLite consensus disorder prediction 671 694 - -
Bva04g01163 987 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Bva04g01163 987 Gene3D - 181 269 IPR029016 -
Bva04g01163 987 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 986 - -
Bva04g01163 987 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g01163 987 Gene3D - 889 973 - -
Bva04g01163 987 MobiDBLite consensus disorder prediction 675 694 - -
Bva04g01163 987 ProSiteProfiles PB1 domain profile. 892 974 IPR000270 GO:0005515
Bva04g01163 987 SUPERFAMILY CAD & PB1 domains 890 977 - -
Bva04g01163 987 PANTHER PROTEIN NLP8 3 986 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01163 Bva-Chr4 7865167 7869770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01163 262 987 NLP Transcription Factor Family AT4G24020 52.310 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bva04g01163 PB1 1.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01163 - - gmx:100786118 1390.56