Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01154 ATGGACAGTCCTACCCTCACTGGATTGCTGAATCAGGTTGCCGGAAAGTTCCCCTCCCGTCGAGCCATCTCCGTTTCCGGCAAGTTTGATCTTTCTCATTCTCGCCTTAATGAACTCGTCGAACGCGCCGCTTCTCGTTTGGTCGCAGCCGGAATCAGCCCCGGCGATGTCATCGCGCTCACCTTCCCCAACACCGTTGAGtttGTTATAACGTTCTTGGCCGCTATTCGAGCTCGAGCCACGGCTGCGCCGCTTAACCAAGCTTACACGACAGAGGAGTTTGAGTTCTATTTATCAGATTCAGAATCGAAGCTCTTAATAACATCCCAAGAAGGGAACAAGCCAGCCGAAGCCGCCGCTTCCAAGCTGAAGATCCCTCACGCGACGGCTTCGCTTTCCAAAGCCGATCACGAACTCTCTCTCTCGCTGAGTCAGTCCGAGTCAGAAGCGAACTCGGTCGCCGAGCTCGTCAATGATCCTTCCGATGTAGCTCTATTCCTTCACACCTCTGGCACCACAAGCCGCCCCAAGGGCGTTCCACTGACGCAATATAACTTAGCTTCATCGGTGAAGAACATTAAATCCGTGTACAAACTCACCGAGTCTGACTCGACCGTGATTGTTCTACCGTTATTTCACGTTCACGGATTGATCGCCGGACTTCTGAGTTCACTCGGATCAGGCGCGGCGGTGGCGCTTCCGGCGGCAGGTCGGTTCTCGGCTTCAACATTTTGGTCAGACATGATTCAATTCAACGCGACGTGGTACACGGCGGTTCCTACCATACACCAAATCTTATTGGATCGCCACCTCAGCAACCCGGATCCCAAACACCCGAAACTCCGGTTCATTCGGAGCTGCAGCGCGTCTCTTGCACCGAGTATATTGAGTCGGTTGGAGGAGGCATTCGGTGCACCGGTTCTGGAGGCTTACGCCATGACCGAGGCTTCCCATCTCATGTTATCGAACCCGTTACCGGAGGCGGGCCCACACAAACCCGGGTCGGTCGGGAAACCCGTGGGTCAAGAAATGGCGATATTGGATGAGAAGGGTGAAGTGCAAAAGGCAGAGGTTCAGGGAGAGGTTTGTATTAGGGGTCCGAATGTGACAAAAGGGTACAAAAATAACCCGGAAGCAAACAAGGCAGCGTTTCAGTTTGGTTGGTTTCACACGGGCGATCTCGGGTTCTTGGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAACTCATCAATCGTGGAGGCGAGAAGATTTCACCAATTGAAGTGGATGCAGTTCTTTTGTCTCATTCAGATATTGCTCAAGCAGTCGCATTTGGAGTGCCAGATGAGAAATATGGTGAAGAGATAAATTGTGCAATTATTCCAAGGGAAGGATCAAACATTGATGAGGCAGAGGTGCTAAGGTTTTGTAAGAAGAACCTAGCAACCTTTAAAGTCCCCAAAAAGGTCTTCATTGCTGATTCTTTGCCGAAGACTGCCTCCGGCAAGATTCTCCGGCGTCTTGTGGCGGAACACTTCTATTCTCAAGCTTA 1541 0.5159 MDSPTLTGLLNQVAGKFPSRRAISVSGKFDLSHSRLNELVERAASRLVAAGISPGDVIALTFPNTVEFVITFLAAIRARATAAPLNQAYTTEEFEFYLSDSESKLLITSQEGNKPAEAAASKLKIPHATASLSKADHELSLSLSQSESEANSVAELVNDPSDVALFLHTSGTTSRPKGVPLTQYNLASSVKNIKSVYKLTESDSTVIVLPLFHVHGLIAGLLSSLGSGAAVALPAAGRFSASTFWSDMIQFNATWYTAVPTIHQILLDRHLSNPDPKHPKLRFIRSCSASLAPSILSRLEEAFGAPVLEAYAMTEASHLMLSNPLPEAGPHKPGSVGKPVGQEMAILDEKGEVQKAEVQGEVCIRGPNVTKGYKNNPEANKAAFQFGWFHTGDLGFLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHSDIAQAVAFGVPDEKYGEEINCAIIPREGSNIDEAEVLRFCKKNLATFKVPKKVFIADSLPKTASGKILRRLVAEHFYSQA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01154 513 CDD FACL_fum10p_like 18 507 IPR045310 GO:0016874
Bva04g01154 513 ProSitePatterns Putative AMP-binding domain signature. 166 177 IPR020845 -
Bva04g01154 513 Gene3D - 2 408 IPR042099 -
Bva04g01154 513 Pfam AMP-binding enzyme C-terminal domain 424 499 IPR025110 -
Bva04g01154 513 SUPERFAMILY Acetyl-CoA synthetase-like 5 511 - -
Bva04g01154 513 PANTHER ACYL-COA SYNTHETASE 4 512 - -
Bva04g01154 513 PANTHER OXALATE--COA LIGASE-LIKE 4 512 - -
Bva04g01154 513 Pfam AMP-binding enzyme 12 415 IPR000873 -
Bva04g01154 513 Gene3D - 409 511 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01154 Bva-Chr4 7767813 7771622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01154 5 512 Monolignol Biosynthesis Gene Families AT4G05160 30.857 1.74e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01154 K22133 - vvi:100256632 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01394 03 13379809 13383213 Bva04g01154 04 7767813 7771622 ECH
Bva04g01154 04 7767813 7771622 Bva04g01154 04 7767813 7771622 ECH