Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01131 ATGGAATCCCAATCATTTCTCTACTTTTTCCTTCTATGGTGGCTTCCTCTTATTCTCTTCCATGGCGGCGCTGATGCACAGTCAGCTATACAACCAGCTCCTTCTTTTGCTTCCCACCATGGATGGGACCCATCATTTGCTCTCATGGTTGCGGCCCTCACTTGTATCCTGCTATTCATGGCTTTCTTTTCCCTCTATCTCCGCCGCTGCAGTGGGTACTATAACTCCGGGCGCAACCCAAATATGGCCGCCGCGGATTGGCCCTGTTCTTGCTCTGAGGGGATCAAACCGGAGGTGCTGAAGACTTTTCCGATCCTTGTCTACTCCACCATCAAAGACCTGAAAATTGGGATAGAAGGGCTTGAGTGTGCCGTGTGTTTGAGTGAGTTCAAGGACTCCGACACTCTCCGGTTGTTGCCCAAATGCAGCCATGTCTTCCACCCTGATTGCATCGATGCCTGGCTAGCCTCCCATGTCACTTGCCCTGTCTGTCGTGCCAATCTGAGCCCAGATACCGGCGAAGTAACCATTGCAATACCCACCCAATTAAACGCTGACCAGTCGAATGATGAAAGTTCTGTTAGAATTGAAGTGGGTGAAATAGAGCAACCCCAACAACACCAACACCCAGTGGAGTCTACCGTGAACAGTGATCATAACAAAACCAATGAAGCAAATGGGAAGCCCAAATCGAGTAAGTTACCGAAGAAGCTTCTGAGATCAAATTCAACAGGTCATTCTTTGGTCGAACCAGGAAAGAATTTGGACAGGTACACGCTGAGGTTGCCGGAGGAGGTGAGGAAGCATATTCTGGTCGATGATCAGCGTTGTGAAAGCTATCATCCCGTGTTTCACAGAGAATGGAGTTCCAAGAATTCGAATGGGTTCTGCTGGAGTGACAGTGAGGGGAGCTGCAGAGGTAGTAAGAGAGACAGAGACGGCAACGGTAGCGAGCGCCAGGGTGGGCGGTTGGACCGGTGGGTTCTATTAAGAACTCCGCCATTTGGAGAGAGGAGCATTCATTG 1025 0.5015 MESQSFLYFFLLWWLPLILFHGGADAQSAIQPAPSFASHHGWDPSFALMVAALTCILLFMAFFSLYLRRCSGYYNSGRNPNMAAADWPCSCSEGIKPEVLKTFPILVYSTIKDLKIGIEGLECAVCLSEFKDSDTLRLLPKCSHVFHPDCIDAWLASHVTCPVCRANLSPDTGEVTIAIPTQLNADQSNDESSVRIEVGEIEQPQQHQHPVESTVNSDHNKTNEANGKPKSSKLPKKLLRSNSTGHSLVEPGKNLDRYTLRLPEEVRKHILVDDQRCESYHPVFHREWSSKNSNGFCWSDSEGSCRGSKRDRDGNGSERQGGRLDRWVLLRTPPFGERSIH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01131 341 Pfam Ring finger domain 122 165 IPR001841 -
Bva04g01131 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 173 IPR013083 -
Bva04g01131 341 CDD RING-H2_PA-TM-RING 122 165 - -
Bva04g01131 341 SMART ring_2 123 164 IPR001841 -
Bva04g01131 341 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Bva04g01131 341 MobiDBLite consensus disorder prediction 201 251 - -
Bva04g01131 341 MobiDBLite consensus disorder prediction 206 222 - -
Bva04g01131 341 SUPERFAMILY RING/U-box 117 174 - -
Bva04g01131 341 PANTHER RING FINGER DOMAIN-CONTAINING 23 274 - -
Bva04g01131 341 MobiDBLite consensus disorder prediction 304 320 - -
Bva04g01131 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 23 274 - -
Bva04g01131 341 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01131 Bva-Chr4 7613684 7615124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01131 1 339 Rapid Response to Elicitors AT3G05200 36.364 1.34e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01131 K10664 - gmx:100782532 249.98