Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01124 ATGGCTCCTCCGCCTCCGGTGGAAAATAACGGCGAATCCACCGCTGGTGATTCTCAGAGATCCGTTCCGACGCCGTTTCTGATTAAAACTTATCAGCTCGTTGACGATCGAGCAATAGACGATGTGATATCTTGGAACGAAGATGGAACTAGTTTCATCGTCTGGAACCCGACGGCTTTCGCTAGAGATTTGCTTCCTAAATGTTTTAAGCACAACAATTTTTCTAGCTTTGTTCGCCAGCTCAACacatatGGATTTCGAAAAGTCGTACCTGATCGGTGGGAATTCTCGAACGATAGTTTTCGCAGAGGCGAGAAGCGACTTCTCTGTGAAATTCAGCGTCGAAAAGTTTCATCACTGGGAGGGACGGCACCAACTGCCACCGTGACAGTTCCGGCGCTGGTGACGTTGACTGCGATACCAGTGGCGAACCCAATCAGATCACCATCAACCTCCGGGGAGGAGGTGGTGTTTTCGTCAAATTCACCGCCGACGATAGCTCCGGCGGACCTCTTGGACGAGAACGAGAGGCTGAGGAAAGAGAATGTTCAGTTAACGAAAGAATTAGCAGAGATGAGATCTCTctgtaataatatatttaatctgATGTCGAAATACGCCAACAAAACGGATACTGTTGCGCAAGGTAGAGAGAGCGGCGGTACTGCAGTGAAACCTCTTGATTTGATGCCAGCAAAATGGAGCTCCGGCGACAAGGCGATGGCGGTGGACGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGCGGGAAGCGTGCGAGAGTGTGTGGAGGAAGGGGACCAGAGGATGAGACAGTATTGAGATTGTATCAGCCGGGGCCCGCGGAGGTGAAATCGGAGCCGTTGGATTGCCAGATCCGTCACGATAATCAGGAAACACCGTGGCTTAACCAGTGCCACGTCCCGGATCAGAGAGTCTGTAATTG 947 0.5016 MAPPPPVENNGESTAGDSQRSVPTPFLIKTYQLVDDRAIDDVISWNEDGTSFIVWNPTAFARDLLPKCFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDSFRRGEKRLLCEIQRRKVSSLGGTAPTATVTVPALVTLTAIPVANPIRSPSTSGEEVVFSSNSPPTIAPADLLDENERLRKENVQLTKELAEMRSLCNNIFNLMSKYANKTDTVAQGRESGGTAVKPLDLMPAKWSSGDKAMAVDEMNPKLFGVAIGGKRARVCGGRGPEDETVLRLYQPGPAEVKSEPLDCQIRHDNQETPWLNQCHVPDQRVCN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01124 315 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 300 - -
Bva04g01124 315 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 MobiDBLite consensus disorder prediction 1 22 - -
Bva04g01124 315 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Bva04g01124 315 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g01124 315 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 300 IPR027725 -
Bva04g01124 315 Coils Coil 175 195 - -
Bva04g01124 315 Gene3D - 18 116 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01124 Bva-Chr4 7578380 7579954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01124 2 315 HSF AT5G62020 47.239 8.71e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva04g01124 HSF_DNA-bind 5.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01124 K09419 - gmx:100812267 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01124 04 7578380 7579954 Bva04g01124 04 7578380 7579954 ECH