Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01117 ATGGGCTTTCTCAAGCGTCTTTTCGGAGGCAAAAAGCAGGGTAGTTCCTCCGGCCAGTCGGGTCACAAGCCGGGTAAGGATAAGAAAAGATGGAGCTTCGCCAAGTCCACCACCAAGGCCATGTCCAACACCGCTCCCCCTACTCTCAACGACTTCGACCCCTCCACCTCCTCGGCCCCTTTCAGCGAATCCCTAGACGCCAATAAGCATGCCATAGCTGTGGCGGCGGCCACTGCGGCCGTCGCGGAGGCCGCTCTCgccgctgcccatgctgcagCAGAAGTAGTCAGACTCACGAGCAGCGGAACCGGCCCCAGCACTAGCAGCAGGCCCGTCGTCGCTGCGCACGTTACCACCAGCCAGCAACGGTGGGCGATGGAGGTCGCCGCCGTTAAGCTCCAATCGGCATTTCGCGGTTACTTGGCAAGGAGAGCATTGAGAGCACTGAAAGCACTGGTGAAGTTGCAAGCATTGGTGAGGGGCCACATAGTGAGAAAGCAAACCGCAGACATGCTCAGGCGCATGCAAACATTGGTACGACTGCAAGCCCGGGCACGTGCTTCACGGTCACATTTATCAGATAATTTGCATTCTTTCAAGTCTTCGCTGTCTCATCATCCTGTTCCTGAATATTATGACCATTCACTCCGTGCATGTAGTACAAAATTTGATGGGTCTTCTGTCCTGAAGAGATGTAGTTCCAATTCCAATTTCCGGGGCATCGATGCAGAGAGAGCTCGGTTTGGTTCGAATTGGTTAGACCGTTGGATGGAAGAAAATGTTTGGAACCATCAACAAGACAGTCCATTGAAAAATGGCCGCGATGACGAGAAGAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTGAACTCCAACCGCAGTAGCAGCTCCTTTCAGACaacacattattattttgctgctgataaaaataatgagaatttTACATCATATGATTCTCCATCAAAACGATCAGCAAAAGCCCTAAACCAAAGTCTCTCATCTCTGAGTGCTTTGAAGttttataaaggaaaagaTGGAGTTGCTACAAGAACTGCTGAAAATAGTCCACAGGCCTTTTCTGCCTCATCTAGGCCTGCAACTGGCGCAAGGAAAGGACCCTTTACGCCCACGAGGAGCGAGTGTTCGTGGGGATTCTTCAATGGATATTCAGGTTACCCTAATTACATGGCCAACACTGAATCTTCCAAGGCTAAGGTGAGATCACAGAGTGCCCCAAAGCAAAGGTTGGAGTTTGAGAGGTATGGTTCAGCAACCAGGAGATCTGTTCAGGGACTTTGGGATGTAATGCAGAGTTCAGATAGGGAAGTTGATTTCAGAAGCCAAGGGTATCCACCCTCAAGCCGTTTGAACGGAATAAGGAGTACCAATTTAAGGTG 1406 0.4815 MGFLKRLFGGKKQGSSSGQSGHKPGKDKKRWSFAKSTTKAMSNTAPPTLNDFDPSTSSAPFSESLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGTGPSTSSRPVVAAHVTTSQQRWAMEVAAVKLQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARARASRSHLSDNLHSFKSSLSHHPVPEYYDHSLRACSTKFDGSSVLKRCSSNSNFRGIDAERARFGSNWLDRWMEENVWNHQQDSPLKNGRDDEKSDKILEVDTWKPHLNSNRSSSSFQTTHYYFAADKNNENFTSYDSPSKRSAKALNQSLSSLSALKFYKGKDGVATRTAENSPQAFSASSRPATGARKGPFTPTRSECSWGFFNGYSGYPNYMANTESSKAKVRSQSAPKQRLEFERYGSATRRSVQGLWDVMQSSDREVDFRSQGYPPSSRLNGIRSTNLR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01117 468 Pfam IQ calmodulin-binding motif 150 167 IPR000048 GO:0005515
Bva04g01117 468 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Bva04g01117 468 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Bva04g01117 468 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Bva04g01117 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 171 IPR027417 -
Bva04g01117 468 MobiDBLite consensus disorder prediction 352 379 - -
Bva04g01117 468 MobiDBLite consensus disorder prediction 35 56 - -
Bva04g01117 468 Pfam Protein of unknown function (DUF4005) 359 433 IPR025064 -
Bva04g01117 468 MobiDBLite consensus disorder prediction 1 56 - -
Bva04g01117 468 SMART iq_5 148 169 IPR000048 GO:0005515
Bva04g01117 468 SMART iq_5 125 147 IPR000048 GO:0005515
Bva04g01117 468 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Bva04g01117 468 MobiDBLite consensus disorder prediction 446 468 - -
Bva04g01117 468 PANTHER CALMODULIN-BINDING PROTEIN 1 466 - -
Bva04g01117 468 Gene3D - 125 178 - -
Bva04g01117 468 MobiDBLite consensus disorder prediction 353 367 - -
Bva04g01117 468 MobiDBLite consensus disorder prediction 453 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01117 Bva-Chr4 7525069 7529453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01117 1 436 IQD Protein Family AT5G62070 49.210 8.24e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01117 - - gmx:100785181 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01117 04 7525069 7529453 Bva04g01117 04 7525069 7529453 ECH