Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01107 ATGCAATTCTTCGATCCCAAAACTGAAATTCCTTGTTTTCCCGAGCTGAGTTTAGAATTACAGAGCAACAAGATTGAAGGTGTAGCTGGCCAAGATCTAATTGTTCTCTGGCTTGATCTGTTCTGGAGGCTAAGTTTCACCGGGAAAATGAGGCCAATTTTCTGTGGAAATTTTGAATACGATGCTCGGCAGTCTGATCTGGAGAGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGGTTTGCTTTTATCTATATGGAAGATGAGCGAGATGCTGAGGATGCAATCCGTGCTCTTGATCGAGTGGAATTTGGTCGGAAGGGACGCAGACTTCGTGTGGAATGGACAAAGCACGAACGTGGCATTAGAAGGCCTGGTGGTTCAAGAAGATCCTCAGCTAATACAAGGCCATCAAAGACCTTATTTGTGATTAATTTTGACACATACCGTACCAGGACTAGGGACTTGGAGAGGCATTTTGAACCATATGGTAAGATTGCCAATGTGAGAATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGACGCCACCCGAGCTTTGGAAGCTACCAATATGAGCAAGTTATTGGACCGAGTTATCTCTGTTGAATTTGCTGTAaaggatgatgatgatagGCGGAACGGATATAGCCCTCAAAGAAGTTATGATCGTCCACGTGATAGAAGTCGTGAAAGAAGACGATCACCCAGTCCTTATCGTAGAGAAAGGGATAGCCCTGATTATGGCCATGCTGCAAGTCCATATAGGCGAGAGAGGGGGAGCCCTAGCCCTGATTATGGTCGTGACCGCAGCCGAAGCCCCCCTAGGAGAGATCGAGCTAGCCCTGATTCTGCCCGTGGAAGCCGCAGTCCACATAGAAGAGAGAGGGATGGTTCTGATCATGTTCGTGGCTCCAGCCATAGTCCTTATCAGAAAGAACGGACGAAAACTAACGGTGGAAACTCTCCCTCCCATAGTCCTAATGAAAGAGAGAGGACAAGCCCTCAAAATGGCCGTGGTTCCAGCCGTAGTCCTTATGAAACAGAGAGAGCTAGTCCTGAGAATGGTCATGGATCCAAGCATAGTCCTGATGCAAGAGGGAATTCCAGTCCTTACAATGGTTATGCAGGGAGCCCAAATTCTATGCCTGAGCCCAGGGACAGTCCCAACTATGATGCTCCTGAAAGTCCCATGCAAGAAAGATACGGCAGCCAGTCACCCCCTGCTGAAGAATG 1259 0.4662 MQFFDPKTEIPCFPELSLELQSNKIEGVAGQDLIVLWLDLFWRLSFTGKMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRVEFGRKGRRLRVEWTKHERGIRRPGGSRRSSANTRPSKTLFVINFDTYRTRTRDLERHFEPYGKIANVRIRRNFAFVQYESEDDATRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPQRSYDRPRDRSRERRRSPSPYRRERDSPDYGHAASPYRRERGSPSPDYGRDRSRSPPRRDRASPDSARGSRSPHRRERDGSDHVRGSSHSPYQKERTKTNGGNSPSHSPNERERTSPQNGRGSSRSPYETERASPENGHGSKHSPDARGNSSPYNGYAGSPNSMPEPRDSPNYDAPESPMQERYGSQSPPAEE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01107 419 SMART rrm1_1 52 119 IPR000504 GO:0003723
Bva04g01107 419 SMART rrm1_1 145 211 IPR000504 GO:0003723
Bva04g01107 419 CDD RRM2_AtRSp31_like 145 214 - -
Bva04g01107 419 MobiDBLite consensus disorder prediction 217 262 - -
Bva04g01107 419 SUPERFAMILY RNA-binding domain, RBD 51 218 IPR035979 GO:0003676
Bva04g01107 419 MobiDBLite consensus disorder prediction 370 385 - -
Bva04g01107 419 MobiDBLite consensus disorder prediction 217 419 - -
Bva04g01107 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 123 IPR000504 GO:0003723
Bva04g01107 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 215 IPR000504 GO:0003723
Bva04g01107 419 MobiDBLite consensus disorder prediction 319 357 - -
Bva04g01107 419 MobiDBLite consensus disorder prediction 269 318 - -
Bva04g01107 419 CDD RRM1_AtRSp31_like 51 122 - -
Bva04g01107 419 Gene3D - 47 133 IPR012677 -
Bva04g01107 419 Gene3D - 134 227 IPR012677 -
Bva04g01107 419 PANTHER - 53 255 - -
Bva04g01107 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 208 IPR000504 GO:0003723
Bva04g01107 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 111 IPR000504 GO:0003723
Bva04g01107 419 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 53 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01107 Bva-Chr4 7404968 7410413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01107 49 235 Eukaryotic Initiation Factors Gene Family AT1G49760 23.529 5.52e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01107 K12893 - gmx:100796509 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01453 03 13810788 13813050 Bva04g01107 04 7404968 7410413 ECH
Bva04g01107 04 7404968 7410413 Bva04g01107 04 7404968 7410413 ECH