Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01106 ATGATTTCTAGTAGGTGTGCAGCTTGCAAGaatcaaagaagaagatgccCTTCGGATTGCATTTTCTCTCCCTACTTTCCTGCCAATGATCCTCAAAGATTTGCAATTGTTCATAGGGTATATGGTGGCAGTAATGTTGGAAAAATGCTTCAGCAAATCCCAATTCATGTACGAGCACAAGCAGCAGatactttatattttgaagCACAATGTCGGATTCAAGACCCTGTTTATGGATGTGCTGGGATTATATCTAAGTTGCATCAACAAATCCAAAATGCAGAAAGTGAGCTAGCTGAAATACAAACTCAGATTGCCTTCCACAAGTCCCAAATCCCACTAGCTGAAGCAAACTTCAATCTCTTGCCAGAACATAGCAACATGGGGCAGTTTCAGCAAGAGGGTCCTTCAAGTCAAACTCCTTGGTTTAATTA 434 0.3848 MISSRCAACKNQRRRCPSDCIFSPYFPANDPQRFAIVHRVYGGSNVGKMLQQIPIHVRAQAADTLYFEAQCRIQDPVYGCAGIISKLHQQIQNAESELAEIQTQIAFHKSQIPLAEANFNLLPEHSNMGQFQQEGPSSQTPWFN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01106 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 113 - -
Bva04g01106 144 Coils Coil 84 111 - -
Bva04g01106 144 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Bva04g01106 144 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Bva04g01106 144 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01106 Bva-Chr4 7400582 7401554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01106 1 112 AS2 family AT3G26660 59.821 3.36e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva04g01106 LOB 9.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01106 - - gmx:100790640 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01106 04 7400582 7401554 Bva04g01106 04 7400582 7401554 ECH