Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01104 ATGGATCGTAACCCTCCCTACCAAAACTACACACCCCCTTCTCATCCTATACAAATTCCCCATGACCTACTTGCCGTTCCAACTGCATTTGAAGATTCTTCTTCCCCATCTCCAACTCAAGGACGTCCCGTTATATCTCCATCCGGGTCTTCGGGTCAACAGGGCACCCGGGGACACCCGGTGTACCGGGGAATCCGGCGCCGGAGCGGGAAATGGGTGTCGGAGATACGAGAGCCACGTAAAACGACACGCATATGGCTGGGAACTTACCCCACACCGGAGATGGCTGCTGCTGCTTATGATGTAGCTGCTCTTGCATTGAAAGGCCTAAACACGCCTCTCAACTTCCCCAATTCTCTTATTTCGTATCCAATTCCGGCGTCATTGTCCGCCACCGATATTCGAAGCGCTGCTGCTGCCGCTTCTGAGGCTAGGCTTGAGAGGCAGGAACAAGGTCCCCGGCCGGAGAATTCTCAGAGCTCATCAAGTAACAGTCAATACCAAGACTACACTTTTGGGAAGAATGAGGAATTCATTGACGAGGATGAGCTGTTGAATATGCCCAGTTTGCTGGATGATATGGCCAGGGGAATGCAGGTAAGCCCACCAAGGATGATCAGGTCACCAGCTTCAGATGATTCTCCGGGAAATTCCGATGGAGATAATCTTTGGAGTTACTATTG 683 0.5154 MDRNPPYQNYTPPSHPIQIPHDLLAVPTAFEDSSSPSPTQGRPVISPSGSSGQQGTRGHPVYRGIRRRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGLNTPLNFPNSLISYPIPASLSATDIRSAAAAASEARLERQEQGPRPENSQSSSSNSQYQDYTFGKNEEFIDEDELLNMPSLLDDMARGMQVSPPRMIRSPASDDSPGNSDGDNLWSYY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01104 227 MobiDBLite consensus disorder prediction 140 168 - -
Bva04g01104 227 MobiDBLite consensus disorder prediction 30 57 - -
Bva04g01104 227 MobiDBLite consensus disorder prediction 183 227 - -
Bva04g01104 227 MobiDBLite consensus disorder prediction 153 168 - -
Bva04g01104 227 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Bva04g01104 227 SMART rav1_2 61 123 IPR001471 GO:0003700|GO:0006355
Bva04g01104 227 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Bva04g01104 227 MobiDBLite consensus disorder prediction 211 227 - -
Bva04g01104 227 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Bva04g01104 227 ProSiteProfiles AP2/ERF domain profile. 61 117 IPR001471 GO:0003700|GO:0006355
Bva04g01104 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 53 226 - -
Bva04g01104 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 53 226 - -
Bva04g01104 227 MobiDBLite consensus disorder prediction 1 66 - -
Bva04g01104 227 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01104 Bva-Chr4 7362647 7364113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01104 46 226 AP2-EREBP Transcription Factor Family AT5G52020 52.604 3.73e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva04g01104 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01104 - - gmx:100776717 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01454 03 13828280 13829571 Bva04g01104 04 7362647 7364113 ECH
Bva04g01104 04 7362647 7364113 Bva04g01104 04 7362647 7364113 ECH