Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01103 ATGTTtaatttcatccatttttcCGACCCACGTCCAGTAAAGCTGGAATCTTTGTTGGACACTTCATCGCCGGTGTCGGGATGTTCCGGCGGCGGTCGTGGGGTGATGTCATCCGACGAGGAGTTGTTGTTGGCTTCGAGGAATCCGAAGAAGCGTGCGGGGAGGAAGAAGTTCAGGGAGACTCGACACCCGGTGTTTAGGGGTGTGAGGAGGAGGAACTCCGGCAAATGGGTGTGCGAAGTGCGTGAGCCTAATAAGAAAAGTAGGATTTGGCTCGGCACTTTTCCGACGGCGGAAATGGCGGCGCGAGCACATGACGTGGCAGCGATTGCGCTACGTGGTCGGTCTGCTTGTCTTAATTTTGCGGACTCGGCGTGGCGACTGCCGGTTCCGGCGTCGATGGAGGCTAAGGATATTCAAAAGGCGGCAGCGGAAGCGGCGGAGGCATTCCGGCCGGGGACAGAGTCGGATACTGATGACGGAAGGCAGGAAGATGCGGCGGTAAGTACGGTGGCAGAGGCAGAGGCAGAGGCAGAGGAAAATATGTTCTATATGGATGAAGAGGCGGTGCCGGAATTGCTGAGGGAAATGGCGCTGATGTCCCCACAACATAGCTGGGGAGATGAGTGGCATGGAGCTGACGTGGATATTGATGATGCTGAGGTGTCATTATGGagttattcaattta 689 0.5414 MFNFIHFSDPRPVKLESLLDTSSPVSGCSGGGRGVMSSDEELLLASRNPKKRAGRKKFRETRHPVFRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPASMEAKDIQKAAAEAAEAFRPGTESDTDDGRQEDAAVSTVAEAEAEAEENMFYMDEEAVPELLREMALMSPQHSWGDEWHGADVDIDDAEVSLWSYSI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01103 229 MobiDBLite consensus disorder prediction 149 168 - -
Bva04g01103 229 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Bva04g01103 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 25 229 - -
Bva04g01103 229 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Bva04g01103 229 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Bva04g01103 229 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Bva04g01103 229 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Bva04g01103 229 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Bva04g01103 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 25 229 IPR045277 GO:0003700
Bva04g01103 229 MobiDBLite consensus disorder prediction 152 166 - -
Bva04g01103 229 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Bva04g01103 229 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01103 Bva-Chr4 7344834 7345828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01103 20 227 AP2-EREBP Transcription Factor Family AT4G25470 59.722 1.78e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g01103 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01103 - - aprc:113872706 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01455 03 13837589 13838485 Bva04g01103 04 7344834 7345828 ECH
Bva04g01103 04 7344834 7345828 Bva04g01103 04 7344834 7345828 ECH