Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01090 ATGGAAGTGAATCAAAACCAGAGTATTGAGGGAAACGCCGACGATTTCAACGATGAAGAGGAGGCTCGTAGTGCCGATATGTCCCCTTCCGATTCGTCAATGGCTGGCCCGCCAGAGTCGAATTTTCCGGAGCCAGTGCCGCCGTCGCCACCCTCCGTTCCCCTGAAAGAAGAGTTGACGGACACGGAGCAAAATCTTGATGAGTGTCGTCCCGTTGGTGTTGCCCCGTTGGCGATGTCAACGCCGGTCAGTAGAGCGGTGGCACCTGCGAGGAAACTATCGAAGGATCGCCACACGAAGGTGGAGGGCCGTGGCCGGAGAATCCGAATGCCGGCGACGTGCGCAGCCAGAATCTTCCAGCTAACCCGGGAGCTCGGGCACAAGTCAGATGGAGAGACAATCAGGTGGTTGCTGGAGCACGCTGAACCCGCAATTATCGAAGCCACAGGCACTGGCACTATCCCCGCCATCGCTGTCTCCGTTGGAGGAACTCTAAAAATTCCAACATCATCGTCTGCGAGACACGCCGGAGAAGAAACCCAAAGGAAACGGAGGAGGCGAGCATCAAACAGCGATTTCATCGACGTGAACGATGAAAGTTCAATGTCTTCCGGGTTAGCTCCAATTGCCCAAATGTCATATGGTGCTGTTAGCGCCGCCAGTTGCAGCACCACTGGCAGTGGTGTCGCTGGCGCACAAGGAGGAATATTCCCCATTTGGCCAATGCGGGTTTCAAATAGTGCAGGGCCTTTCTTCATGTTCCCTAACCCTGCTGGCTCCGGTGAAGCTAATCAGCCACAGTATTTTGCAATTCCGGCAACTGCGACTCCATTTTGTAATATTCAAGCAAGACCCATTTCGAATTTTGTTTCTGCTCTGCAACCCAGTGAACAATTACCGCAGGTTCAACCTTCTGGGTCGGCTTCAAATGGCAATCCAGGTACTGCTATTTCTTCGTCGACATTGGCTCCTAGTTTGAGCTCAGGTACCAGTTCAAGTGTAAGTGTTACTACCAGTGGTTCCAGCACTAGAACCGCTCAGATGCTCAGGGATTTCTCTCTGGAAATTTATGACAAGAAAGAGCTCCAATTTTTGGGTCGATCTGCTAATTCAGAACCGCCATGTTCAAAGCCCTG 1136 0.5238 MEVNQNQSIEGNADDFNDEEEARSADMSPSDSSMAGPPESNFPEPVPPSPPSVPLKEELTDTEQNLDECRPVGVAPLAMSTPVSRAVAPARKLSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVSVGGTLKIPTSSSARHAGEETQRKRRRRASNSDFIDVNDESSMSSGLAPIAQMSYGAVSAASCSTTGSGVAGAQGGIFPIWPMRVSNSAGPFFMFPNPAGSGEANQPQYFAIPATATPFCNIQARPISNFVSALQPSEQLPQVQPSGSASNGNPGTAISSSTLAPSLSSGTSSSVSVTTSGSSTRTAQMLRDFSLEIYDKKELQFLGRSANSEPPCSKP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01090 378 PANTHER TRANSCRIPTION FACTOR TCP9 62 370 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 176 193 - -
Bva04g01090 378 Pfam TCP family transcription factor 94 184 IPR017887 -
Bva04g01090 378 MobiDBLite consensus disorder prediction 81 104 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 1 63 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 297 345 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 168 199 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 90 104 - -
Bva04g01090 378 MobiDBLite consensus disorder prediction 40 54 - -
Bva04g01090 378 ProSiteProfiles TCP domain profile. 94 148 IPR017887 -
Bva04g01090 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 370 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01090 Bva-Chr4 7244003 7246271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01090 82 365 TCP Transcription Factor Family AT5G51910 50.342 1.15e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva04g01090 TCP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01090 - - pper:18785993 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01468 03 13924527 13926081 Bva04g01090 04 7244003 7246271 ECH
Bva04g01090 04 7244003 7246271 Bva04g01090 04 7244003 7246271 ECH