Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01085 ATGGGAAGGGGGAGAGTGATTCTGGAGAGGATAGAGAACAAGACCAACCGGCAAGTGACCttctcaaagcgaagaaatgGATTGCTGAAGAAAGCATATGAGCTTTCTGTGCTGTGCGATGCTGAAGTTGGCCTTATCATTTTTTCTAGCCGTGGCAAGCTTTTCCAGTTCAGCAGTACtgaCATAAACAGAATTATTGAGCGGTATCGCCAATGTTGTTTCCTCCCACAAGAAAGCAACATAGTCGAAGATGAACCTCAgAGATTGCAGCAGGAGCTGTTAAGATTAAAACTCAAACATGAATCTCTTGAGCGTGCAGACAGGAATCTTCGAGGACTGGACCTTGAATCACTTAGCATGAAGGAGTTGCAGAATCTTGAGAAACAACTTGAAAGATCGCTTTCAAAGACTATACAGCGGAAGACACAGAAGATGTTGGAACTACTGAATGAATTACGCGAAAAGGAGCACAACCTTGCAGAGCTTAACAAAGAACTCCAGTCCCAGCATTGTCAAAAGTTTCAGCTTGAGGAAGCAGATGGATTTGCCGGAATTTTAGAAAGCCCTTCGATCGCCAGAAACAACCGATCTAAGGTGCCTGCTGGGCAGGCCAATTGTTTTGATTCTGGGACAACAACAGGCGGGTACCTGCATtgtttaaaaggaaaagaaattgacaaaAGGACGGAGGGTGAAGACAGCACTGACAGCAACAATGAGCGGCTGTTCTG 731 0.4282 MGRGRVILERIENKTNRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLFQFSSTDINRIIERYRQCCFLPQESNIVEDEPQRLQQELLRLKLKHESLERADRNLRGLDLESLSMKELQNLEKQLERSLSKTIQRKTQKMLELLNELREKEHNLAELNKELQSQHCQKFQLEEADGFAGILESPSIARNNRSKVPAGQANCFDSGTTTGGYLHCLKGKEIDKRTEGEDSTDSNNERLF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01085 243 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 179 - -
Bva04g01085 243 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g01085 243 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g01085 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 - -
Bva04g01085 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bva04g01085 243 Coils Coil 120 179 - -
Bva04g01085 243 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Bva04g01085 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva04g01085 243 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01085 Bva-Chr4 7207859 7213131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01085 1 211 MADS-box Gene Family AT2G45650 51.152 4.41e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva04g01085 K-box 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01085 K09264 - qsu:112034717 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01085 04 7207859 7213131 Bva04g01085 04 7207859 7213131 ECH