Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01066 ATGCCTTCTCTTCCCCTCTCTGATGCCATTTTTTCTGAGAGCCACAGTGATAAGGTGAAggagaacaagaagaagatgaagaaccAGACTCAAGCTTCAGACCCCGAAGGATCGGTTGGCAAGAAGAGTAAGAAAAGTTCCAAACTTAGGAGTACACCGAAGGCGTCTGATTCTGAGGATGAGGGATTTTCGGACAAGaaggtgaagaagaagaagaaggagagcAAAAAGCGTAAAGCTTTTGAAACTGAGAATATGATGGATGGGGACGAAAACAAGAGTGAGACTAGCTCCGAGCTTGTTGAGCCGGAAACCTCGAAACCCAAGACTgatgagaagagaaagaagaaaaaggcgAAGCTGGAGGAGCTTGAAGTGGACGAAGAAGAGGTTGAGAAGAAGGATCCTAATGCAATTGCGAATTTCAGAATATCGGAGACGTTGAGGGCAAAGTTGAAGGAGAAGGGAATTGAATCGCTGTTCCCTATTCAGGCCATGACTTTCGATACCATTCTCGATGGGTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGggTAAAACTTTGGCCTTTGTGTTGCCCATTTTACAATCTTTGACAGATGGTCCTGCAAAAGCTTCTAGAAAGACTGGATATGGGAGAGCGCCAAGCGTTCTTGTGCTTTTACCTACCAGGGAATTGGCTAATCAGGTATTTgctgattttgatatttacgGAAGAGCACTTGGATTGAGTTCCTGCTGTTTATATGGTGGAGCCTCATATCAAGTTCAAGATATTAGGCTCAAGAGAGGTGTTGATATCGTTATTGGAACACCAGGCCGCATAAAGGATCATATTGAGAGGGGAAATATTGATCTAAGCCAACTAAGGTTCCGTGCCCTTGATGAGGCAGATGAGATGCTGAAGATGGGTTTTGTTGAAGATGTTGAACTCATACTAGGTAAAGTAGGGGATGCTAGTAAAGTTCAGACACTCCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAACATATTGCTGCAAAATTTCTAAAGCCAGATAAGAAAACTGCTGACCTCGTGGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTTCTGGTTCTGCCAGGTCCCAGCTTATACCTGATATTATTCGCTGTTATAGCAGTGGAGGTCGGACAATTATATTCACTGAGACAAAAGAGTCTGCATCGGAGCTTGCAGGGTTATTGCCTGGAGCACGAGCTCTGCATGGTGACATTCAGCAGGCACAACGAGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACGTTGGTGGCCACAAATGTGGCAGCTCGGGGTTTGGACATCAATGATGTTCAGTTAATTATCCAGtgTGAGCCTCCACGTGATGTTGAAGCCTATATCCATCGATCTGGGCGCACAGGAAGAGCAGGGAATACTGGAGTTGCTGTTATGCTTTATGATCCTAGAATgtcaaatatatcaaaaatagaaagggAGTCAGGTGTGAAATTTGAGCATGTATCTGCTCCCCAACCAGCTGATATTGCCAAAGCTGTTGGTGCGGAGGCTGCTGAAATGATAACTCAAGTCTCTGATTGTGTGATTCCTGCATTCAAGACTGCTGCTGAGGAGCTTCTGAACAACTCTGGTTTATCATCTGTTCAGTTGCTTGCAAAAGCTCTGGCTAAGACTGTTGGTTATActgagataaagaaaagatCACTTCTTACATCCATGGAAAACTATGTCACATTGCTTCTAGAGATAGGAAGGCCCATCTACACCCCATCTTTTGCGTATGGAGTCTTGAGGAGATTCTTGCCTGAGGAGAAGGTTGAGGCAGTGAAGGGGCTTACTCTCACTGCTGATGGAAACGGTGCTGTATTTGATGTGGCAGCCGAAGATTTAGATACATATCTTGCTGGCCAGGAGAATGCAGCAAATTTAAGCTTAGAGGTGTTGAATGCATTGCCGCGGCTGCAAGAAAGAGACCAGTCAAGAGGGGGCAGATTTGGCGGCCGGGGTGGGTTTGGTGATAGAAGTGGCGGTGGTAACAGGTTTGGTGGAAGAGGTGGTGGCAGGAATGGTGGATTTTCGAATCAGAGGAATAATAGGTTCTCCAATGGAGGTGGGAGAGGTCGAGACAACAAGGGGGCAAAGAGATGGTA 2183 0.4297 MPSLPLSDAIFSESHSDKVKENKKKMKNQTQASDPEGSVGKKSKKSSKLRSTPKASDSEDEGFSDKKVKKKKKESKKRKAFETENMMDGDENKSETSSELVEPETSKPKTDEKRKKKKAKLEELEVDEEEVEKKDPNAIANFRISETLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILQSLTDGPAKASRKTGYGRAPSVLVLLPTRELANQVFADFDIYGRALGLSSCCLYGGASYQVQDIRLKRGVDIVIGTPGRIKDHIERGNIDLSQLRFRALDEADEMLKMGFVEDVELILGKVGDASKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNEKMKASTNVRHIVLPCSGSARSQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRMSNISKIERESGVKFEHVSAPQPADIAKAVGAEAAEMITQVSDCVIPAFKTAAEELLNNSGLSSVQLLAKALAKTVGYTEIKKRSLLTSMENYVTLLLEIGRPIYTPSFAYGVLRRFLPEEKVEAVKGLTLTADGNGAVFDVAAEDLDTYLAGQENAANLSLEVLNALPRLQERDQSRGGRFGGRGGFGDRSGGGNRFGGRGGGRNGGFSNQRNNRFSNGGGRGRDNKGAKRW 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01066 727 MobiDBLite consensus disorder prediction 667 727 - -
Bva04g01066 727 MobiDBLite consensus disorder prediction 1 126 - -
Bva04g01066 727 CDD SF2_C_DEAD 365 491 - -
Bva04g01066 727 Coils Coil 114 134 - -
Bva04g01066 727 Gene3D - 84 350 IPR027417 -
Bva04g01066 727 Pfam Helicase conserved C-terminal domain 384 482 IPR001650 -
Bva04g01066 727 Gene3D - 364 588 IPR027417 -
Bva04g01066 727 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 54 699 - -
Bva04g01066 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 318 IPR027417 -
Bva04g01066 727 Pfam GUCT (NUC152) domain 571 666 IPR012562 GO:0003723|GO:0004386|GO:0005524
Bva04g01066 727 SUPERFAMILY RNA-binding domain, RBD 575 658 IPR035979 GO:0003676
Bva04g01066 727 Pfam DEAD/DEAH box helicase 161 338 IPR011545 GO:0003676|GO:0005524
Bva04g01066 727 Gene3D - 589 660 - -
Bva04g01066 727 CDD GUCT_RH7_like 578 663 - -
Bva04g01066 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 493 IPR027417 -
Bva04g01066 727 MobiDBLite consensus disorder prediction 50 68 - -
Bva04g01066 727 MobiDBLite consensus disorder prediction 77 124 - -
Bva04g01066 727 MobiDBLite consensus disorder prediction 701 715 - -
Bva04g01066 727 SMART helicmild6 405 482 IPR001650 -
Bva04g01066 727 MobiDBLite consensus disorder prediction 13 30 - -
Bva04g01066 727 CDD DEADc 148 345 - -
Bva04g01066 727 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 699 - -
Bva04g01066 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 521 IPR001650 -
Bva04g01066 727 SMART ultradead3 156 368 IPR014001 -
Bva04g01066 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 350 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01066 Bva-Chr4 7049243 7054579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01066 174 521 Eukaryotic Initiation Factors Gene Family AT1G72730 31.268 3.37e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01066 K16911 - jre:108998595 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01066 04 7049243 7054579 Bva04g01066 04 7049243 7054579 ECH