Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01042 ATGGAACATTCAAAGAGTGAGAAGTGCTGTCAGTTGTGCGCAGTTGATCACCAGCTCACTTTTGACCCACCACCCGTTTACTGCACACCATGTGGTGCCGGCATTAAACGGAATGCTACGTATTATACCCTGGGCGCTGGTGAGACCCAACATTGTTTATGCGTTCCATGCTATGATAAGGCTCAAGGGGATACCGTCACTGTTTATGGGAAAGCCATTCCCAAGGCAAGGctggaaaagaaggaaaacgaTGAGGAAACCGAGGAAAAGTCGGTTCGATGTGATAAATGTGAAGCTTGGCAACATCAAATTTGTGCCTTATTCAATGGTCGAAGGAAAGCTGAATACACTTGTCCTAACTGCTCTAttcaggaaaaagaaagaggagagcGCGACCCGTTACCCCAAAGTTCTGTTCTTGGGGCCAAGGATTTGCCAAGAACTATTCTCAGCGACCACATTGAAGAACGGTTGTTTAGGCGATTAAAGcaggaaagagaagagagggcAACGCTTCAAGGAAAAAGTTACGATGAGGTGCCTGGAGCTGAGGACCTTGTGGTTAGAGTTGTGTCATCTGTTGACAAAAAGCTAGAAGTGAAACAGGggtttttggaaattttccCAGAAGAAAATTCCCCGACAGAATTCCCATATAAATCAAAGgtaattttgttgtttcagAAGATTGAAGATGTTGAAGTTTTCCTATTTGGCATGTTCGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCCGGGTGTATCTTTATTGTTTGGACTCTGTGAAGTATTTTAGGCCTGAGGTCAAAGCAGCAACTGGAGAGGCCCTTAGAACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGTTGCTATATATGGGCCTGTCCTCCGTTAAAGGGTGAAGATTACATTTTCTATTGTCATCCAGAAATCCAGAAGACTCCAAAATCTGATAAGCTTCGGGAATGgTTCCTGGAGATGTTGAGAAAAGCTATGAAGGAGAATATTGTGGTCGAGCTCACCAACTTATATGACCATTTCTTTGTGTCTACTGGTGAATGTAAGGCTAAGGTTACTGCCGCAAGACTACCATATTTTGATGGTGACTACTGGCCAGGAGTTGCAGGAGATTTGAATGCATCCTGTCAATCAGATCTCTGGGGAAATGCGTCAAAAAATCTGCTTCTAATGCATAAACTCGGTGAAACCATCTGTCCCATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCACTGTTGTATTCTAATGGTGTCCGGAAGCCATTGGGTTTGCAACCAATGCAAGAATTTTCAGATTTGTGATAAGTGTCACGAAGCAGAACAGAACCGTGACGAAGGAGAAAGGCATCCTATTAATCAAAGGGAAAAGCATACCCTTTATCCAGTTGAAATTACTGATTTGCCAGTTGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAATTCTTTAACACTAGACAGGCATTTCTGAGTCTCTGTCAGGGTAATCACTATCAGTATGATACACTGAGACGCGCCAAGCATTCCTCAATGATGGTCCTTTATCATCTTCATAATCCAACTGCTCCTGCATATGTCTCAACTTGTAATATATGCCATCTTGACATAGAAACTGCTCAAGGTTGGCGTTGTCAAGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGACGGAGGCATTCGTCATCCTCATAAGTTGACCAACCATCCATCAATGGCTGACAGTGATGCTCAGAATGAAGAAGCGAGGCAGCTTCGAGTATTGAAGCTACAAGAAATGCTTGATCTTATTGTGCATGCATCCGAATGTCGTTCTGCACATTGCCAATATCCAAATTGCCGCAAAGTGAAGGGGCTTTTCCGCCATGGGATACAATGCAAAACACTTGCCTCTGGTGGCTGTGCTCTTTGTAAGAAAATGTGGTATTTGCTTCAACTCCATTCTCGTGCCTGCAAAGAATCAAAGTGTTGCCCCGTACCACGTTGCAGagaaatgaaagaacaTTTGATGAGGTTGCAGCAGCAGTCTGATTCGCGGCGTAGAGCAGCTGTGACGGAGGAGGTGAAACAGAGAGCTGCAGGAGTTGCCCACAATGTGTA 2183 0.4123 MEHSKSEKCCQLCAVDHQLTFDPPPVYCTPCGAGIKRNATYYTLGAGETQHCLCVPCYDKAQGDTVTVYGKAIPKARLEKKENDEETEEKSVRCDKCEAWQHQICALFNGRRKAEYTCPNCSIQEKERGERDPLPQSSVLGAKDLPRTILSDHIEERLFRRLKQEREERATLQGKSYDEVPGAEDLVVRVVSSVDKKLEVKQGFLEIFPEENSPTEFPYKSKVILLFQKIEDVEVFLFGMFVQEFGSECQFPNQRRVYLYCLDSVKYFRPEVKAATGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYIFYCHPEIQKTPKSDKLREWFLEMLRKAMKENIVVELTNLYDHFFVSTGECKAKVTAARLPYFDGDYWPGVAGDLNASCQSDLWGNASKNLLLMHKLGETICPMKEDFIMVHLQHACTHCCILMVSGSHWVCNQCKNFQICDKCHEAEQNRDEGERHPINQREKHTLYPVEITDLPVDTKDKDEILESEFFNTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAYVSTCNICHLDIETAQGWRCQVCPEYDVCNACYQKDGGIRHPHKLTNHPSMADSDAQNEEARQLRVLKLQEMLDLIVHASECRSAHCQYPNCRKVKGLFRHGIQCKTLASGGCALCKKMWYLLQLHSRACKESKCCPVPRCREMKEHLMRLQQQSDSRRRAAVTEEVKQRAAGVAHNV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01042 727 SMART zz_5 428 472 IPR000433 GO:0008270
Bva04g01042 727 SMART zz_5 548 594 IPR000433 GO:0008270
Bva04g01042 727 PANTHER CBP/P300-RELATED 392 725 IPR013178 GO:0004402|GO:0006355|GO:0016573
Bva04g01042 727 Pfam Histone acetylation protein 179 391 IPR013178 GO:0004402|GO:0006355|GO:0016573
Bva04g01042 727 SMART TAZ_2 612 691 IPR000197 -
Bva04g01042 727 SMART KAT11_2 172 441 IPR013178 GO:0004402|GO:0006355|GO:0016573
Bva04g01042 727 ProSiteProfiles Zinc finger ZZ-type profile. 429 492 IPR000433 GO:0008270
Bva04g01042 727 Coils Coil 155 175 - -
Bva04g01042 727 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 392 725 - -
Bva04g01042 727 SUPERFAMILY RING/U-box 530 597 - -
Bva04g01042 727 SUPERFAMILY RING/U-box 409 482 - -
Bva04g01042 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 121 IPR013083 -
Bva04g01042 727 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 1 392 - -
Bva04g01042 727 ProSiteProfiles Zinc finger ZZ-type profile. 549 602 IPR000433 GO:0008270
Bva04g01042 727 Gene3D - 548 601 IPR043145 -
Bva04g01042 727 SUPERFAMILY TAZ domain 611 695 IPR035898 -
Bva04g01042 727 PANTHER CBP/P300-RELATED 1 392 IPR013178 GO:0004402|GO:0006355|GO:0016573
Bva04g01042 727 Pfam Zinc finger, ZZ type 552 592 IPR000433 GO:0008270
Bva04g01042 727 Pfam TAZ zinc finger 618 690 IPR000197 -
Bva04g01042 727 Gene3D TAZ domain 606 721 IPR035898 -
Bva04g01042 727 ProSitePatterns Zinc finger PHD-type signature. 52 121 IPR019786 -
Bva04g01042 727 SUPERFAMILY FYVE/PHD zinc finger 87 126 IPR011011 -
Bva04g01042 727 ProSitePatterns Zinc finger ZZ-type signature. 554 581 IPR000433 GO:0008270
Bva04g01042 727 ProSiteProfiles Zinc finger TAZ-type profile. 611 693 IPR000197 -
Bva04g01042 727 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 139 547 IPR031162 GO:0004402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01042 Bva-Chr4 6862255 6867663 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Bva04g01042 HAT_KAT11 1.1e-28 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01042 K04498 - jre:109021274 1277.69