Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01041 ATGGTCGTGAGTGCAGGGAAGCCATTGAAGCGGATGAAGAGACGAACCACGGCTGATTATCACGATTTCCTCACTTTTCCTCCGGCGTCTTTCACCGGAGCGGAGGATTTCTCCGGCGGGCCTTTCCGGACGAATGTGCAATCCTTTTTGTCGAAATACGCGCTGCTGCCGCCACCTTCAGCTTTGTTCCCTCACCTGCTGACGTGGCAGATCCTTTTCCGAGTAGGGAACCTTACGGACGGACCGGAGTCGAGCCCGGCGACGGTGTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCCGTCTATTGCGACCAGTGTCGAGTTGTTGgttGGAGTGGGCATCCAGTATGCGGGAAGCGATACCACTTTATAATCAAGGCCGATGGTAGCAGTATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATCCTGCATCTCTCAGAGTCCAAGTGCAAGTCATGCAGCCACGTTACAACTTCGGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAAAACACAACTCATCTTTTGCATGGTGTAGTCCATTCCAATGGGTATGGGCATCTTCTCCGGGTTAATGGTAGAGAAGGGGGCTCCAGAATTGTCTCTGGCTGCCACATTATGAACTTCTGGGATCGCCTCTGTACGACACTGGGAGTCAGAAAAGTTAGTGTGATGGATGTATCAAAGAAATATGGTTTGGAGTATCGTCTGCTTCATGCCATTACAAAGGGGCATCCATGGTATGGTGACTGGGGGTATCAATTTGGCTCTGGTAGCTATGGTGTTACACATGAAGTGTATACATCTGCAGTTGAAAGCCTGTCCAATTTACCCCTGTCCATCTTCCTCTCCCAGGGACAGAAACCTTACCCTTCTTTGCAGAACACTATCTCATATTACCAGTCTTTATCCAAGCATGAGCTTGTAAATATAAGAgacctcttttgctttttgatGGGATTGATTCATGATGCCCGCAAGACGGATTCAAGTTTTGATGATGTCACCTGCAAGAAGCGCTGTTTTAATGCTGCAGGAGCATGTTCATGGGCCAATAGTGATATTGAACGTGTGGAGGAAGCCATGTTCAGAGTGCTTCGTGCAGTGTCTGGGTCCAATTGGGTAAGCTGGCGCTCTCTAAGGGGAGCTGTCTGCAAAGTGGCCTCTCCAGAGTTGCTTGATTACTGCCTTGGAGAACTGGGAGGAAAAGTCGTCTGTAATGGAATGGTTGTTAGCACCCGATGCAATCCTGATACTGGTTCTCTTGAGTACAGACTTGAGGCCTGGAATGATTCTTGCAATGGAACTGTAGCAAACAATAATTCGTCAGCCTTGAAGTGTCCCTCTGTAGACAAGCTTCTACATGACTTGAGATATTTATACGAGTCATTGCTTCATCCTCAAATGATGCTAAGCTACGGCCCTGAGGGGATAAGGGCTTGTGCAATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTGAAAGATTTCAGTTCTGACACGATGCCAATGACAAATGTATATAGAATCCGCCTACGGTGTCATGTACAACTTGTGGATGAATCCGAAGAGCCCAGCGTAAACCCTCCACCAGAATTAATCGTCCTACCCACAAATGCCACGGTGTCTGACCTAAAGATTGAAGTGGCAAATGCCTTTCAAGATGTATATCTCGTGTTTAGAAGACTTCAAGTTGATGAGCTACTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTCAACCTCTTGTTAGGATCAACAGAAGAGGTTCATGTCCGAGGAAGATGCATCGGAAAGACTGGATTGTCTAAGTTCCGGATGGAACGGGGACTCGAGAGGTGGACAGTGGATTGCAGCTGCGGGGCTAAGGACGATGATGGCGAGAGAATGTTGGCTTGTGATATATGTGGAGTGTGGCGACACACTAGGTGTTCAGACATACACGATGCCGAGCCCGTCCCGGCTCGGTTTGTTTGCCCAAGATGCCAAAACCCTGACTCAAAACCTAAACCCAGTGGCCACTGTAAAGATGAGACCGTGACTAACATTACTGCAACGAATAGCTGCTGCTTTGGAAATGCCTTGCCACTGCCGTCTGATGTTACGTG 2135 0.481 MVVSAGKPLKRMKRRTTADYHDFLTFPPASFTGAEDFSGGPFRTNVQSFLSKYALLPPPSALFPHLLTWQILFRVGNLTDGPESSPATVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCSHVTTSDDVEDWVYHQLENTTHLLHGVVHSNGYGHLLRVNGREGGSRIVSGCHIMNFWDRLCTTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGDWGYQFGSGSYGVTHEVYTSAVESLSNLPLSIFLSQGQKPYPSLQNTISYYQSLSKHELVNIRDLFCFLMGLIHDARKTDSSFDDVTCKKRCFNAAGACSWANSDIERVEEAMFRVLRAVSGSNWVSWRSLRGAVCKVASPELLDYCLGELGGKVVCNGMVVSTRCNPDTGSLEYRLEAWNDSCNGTVANNNSSALKCPSVDKLLHDLRYLYESLLHPQMMLSYGPEGIRACAMSSAQKLLDCKQFVKDFSSDTMPMTNVYRIRLRCHVQLVDESEEPSVNPPPELIVLPTNATVSDLKIEVANAFQDVYLVFRRLQVDELLGYSGVDDSTQVNLLLGSTEEVHVRGRCIGKTGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDAEPVPARFVCPRCQNPDSKPKPSGHCKDETVTNITATNSCCFGNALPLPSDVT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01041 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 677 IPR013083 -
Bva04g01041 711 SUPERFAMILY FYVE/PHD zinc finger 616 674 IPR011011 -
Bva04g01041 711 CDD PHD_MMD1_like 626 671 - -
Bva04g01041 711 PANTHER OS01G0877500 PROTEIN 1 679 - -
Bva04g01041 711 SMART PHD_3 626 672 IPR001965 -
Bva04g01041 711 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 679 - -
Bva04g01041 711 Pfam PHD-finger 627 673 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01041 Bva-Chr4 6854416 6859521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01041 85 671 PHD Transcription Factor Family AT5G22260 31.470 1.50e-87 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva04g01041 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01041 - - gmx:100818189 1102.81