Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01027 ATGGAGAGTGCAGATGGTGTAAACCGTGGCGAGAATGGACACGCCATAGAAAATGAGGGTCCATTGGATGAGGAGGTTCCGCGGTTCTGGTCACAGATTTCGGAGAGAAATATGACATATGCAGAGCCACTTCTAGCGAAGAGGATTAATACAACTTCCCAGATTGCCATAGTTGGGGCCAATCTATGCCCGATTGAAAGCCTTGACTATGAGATTTTTGAGAATGAAATATTCAAGCAAGACTGGAGGTCAAGGAGGAAGGTTCAGGTATTCCAGTACATTGTACTTAAGTGGGGATTTGCTCTTCTTATAGGATTAGGTACGGGACTGGTTGGCTTCTTCAATAACATAGCAGTTGAGAACATATCTGGTTTCAAGCTGCTTATGACGACCAAATTCATGTCCAAAAACAAATATTTTGAGGCTTTCATAGTACTTGCTAGTTGCAATGTAGGTTTGGCAGCCGCTGCAGCAGCTCTTTGTGCTTTCCTTGCTCCAGCTGCAGCAGGCTCTGGTATCCCTGAGGTGAAAGCCTATCTCAATGGTATTGATGCTCATTCTATACTTGCTCCCAGCACTCTTTTTGTAAAGATTTTTGGATCCATTCTTGGAGTGTCTGCTGGACTTGTGGTGGGCAAAGAAGGGCCTATGGTACATACAGGTGCATGCATAGCTTCTTTGCTTGGCCAAGGAGGATCTCGCAAGTATCACTTAACTTGCAGTTGGCTGAGGTATTTCAAAAATGACCGGGACCGGCGAGACATGATTACTTGCGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCTGCTTCATGGTGGCGGAATACTCTTCTTTGGAGGACATTTTTCACAACTGCAGTGGTGGCAATTGTTTTGAGATCTGCAATTCAGTTTTGTGCCACTGGAAAATGTGGGCTATTTGGGGAAGGTGGTCTGATAATGTATGATGTCAGTGCAGCCAAGGTCACATATAGTGAATATGACATAATAGCAGTGTTACTCCTGGGAATCATCGGAGGCCTTCTTGGAAGTGTATATAATTACCTTGTGGATAAGGTTGTTCGTACATATAGCATCATCAACGAGAAAGGCCCGGCTTTCAAAATCTCACTGGTAATCACAATCGCTCTTTTGAcatcttgtatttcttttggcCTCCCATGCTTTGCAAAGTGCATTCCATGTCCTGCTGATGTGCCAGTGAAATGTCCCAGTACAGTGTCCGGCAACTACAAGAACTTTCAATGTCCACCAGGCCACTACAATGACCTTGCTTCCCTCTTTCTGAACACCAACGATGATGCTATTCGAAACCTCTTCAGCACCAGCACAACAAGAGAATTTCGCATTTCCAgtctctttatcttttttgctGCTATTTACATTCTTGGGATAATCACTTATGGCATTGCTGTTCCATCTGGGCTTTTCATTCCTGTGATTCTTGCTGGTGCTGTCTATGGTCGTTTGGTAGGGAGATTATTTGAATCACTCTCCAAGCTTGACACAGGACTCTTTGCTCTCCTTGGAGCTGCTTCCTTCCTAGGTGGCACCATGAGAATGACTGTCTCACTCTGTATTATACTGCTCGAGCTCACTAATGATCTCTTGTTACTTCCTCTAGTGATGTTGGTCTTATTGACCTCAAAAACTGTGGCTGATAACTTCAATATGGGCGTTTACGATCAAATACTCAAGATAAAAGGGCTTCCTTATTTGGAGGCACATGCAGAAGCTTACATGAGGACTTTAGTTGCAAGTGATGTTGTCACTGGTCCATTGATCACCTTTTCTGGTATAGAAAGGGTGGGAAATATAGTATATGCTCTGAAAACCACTGGGCATAATGGGTTTCCTGTCATTGATGAGCCACCATTCTCAGATGCACCAGAGTTGTGTGGGATTGTGCTGAGGTCCCATTTGCTGGTGTTGCTGAAGGGGAAGAATTTCTCAACAGATAGGGCGTTTTCTAGCCGGAATGTCTTCCAGAGAATCTCTGCATTAGATTTTGGAAAGGGAGGATCAGGGAAAGGAATCAAACTAGAGGATTTGGATATTCAAGAGGATGAGATGGATATGTTTGTTGATCTTCACCCCATAACTAATGCATCCCCATACACTGTGGTGGAAACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACTTGGTCTGAGGCACTTGTGTGTGGTCCCAAAGAGCCAAGGGAGGCCTCCAGTGGTTGGGATTCTAACTCGCCATGATTTCATGCCGGAGCATGTTTTGGGACTTTACCCTCATATCAAGCCTCACAAGCATGCTTG 2345 0.4431 MESADGVNRGENGHAIENEGPLDEEVPRFWSQISERNMTYAEPLLAKRINTTSQIAIVGANLCPIESLDYEIFENEIFKQDWRSRRKVQVFQYIVLKWGFALLIGLGTGLVGFFNNIAVENISGFKLLMTTKFMSKNKYFEAFIVLASCNVGLAAAAAALCAFLAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGLVVGKEGPMVHTGACIASLLGQGGSRKYHLTCSWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNTLLWRTFFTTAVVAIVLRSAIQFCATGKCGLFGEGGLIMYDVSAAKVTYSEYDIIAVLLLGIIGGLLGSVYNYLVDKVVRTYSIINEKGPAFKISLVITIALLTSCISFGLPCFAKCIPCPADVPVKCPSTVSGNYKNFQCPPGHYNDLASLFLNTNDDAIRNLFSTSTTREFRISSLFIFFAAIYILGIITYGIAVPSGLFIPVILAGAVYGRLVGRLFESLSKLDTGLFALLGAASFLGGTMRMTVSLCIILLELTNDLLLLPLVMLVLLTSKTVADNFNMGVYDQILKIKGLPYLEAHAEAYMRTLVASDVVTGPLITFSGIERVGNIVYALKTTGHNGFPVIDEPPFSDAPELCGIVLRSHLLVLLKGKNFSTDRAFSSRNVFQRISALDFGKGGSGKGIKLEDLDIQEDEMDMFVDLHPITNASPYTVVETMSLAKAAILFRQLGLRHLCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKPHKHA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01027 781 SMART cbs_1 717 768 IPR000644 -
Bva04g01027 781 SMART cbs_1 606 659 IPR000644 -
Bva04g01027 781 ProSiteProfiles CBS domain profile. 713 777 IPR000644 -
Bva04g01027 781 Gene3D - 587 769 IPR046342 -
Bva04g01027 781 SUPERFAMILY CBS-domain pair 590 764 IPR046342 -
Bva04g01027 781 Gene3D Clc chloride channel 89 586 - -
Bva04g01027 781 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 166 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 261 280 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 Pfam CBS domain 717 763 IPR000644 -
Bva04g01027 781 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 766 - -
Bva04g01027 781 Pfam Voltage gated chloride channel 154 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bva04g01027 781 PRINTS Plant CLC chloride channel signature 282 290 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01027 781 PRINTS Plant CLC chloride channel signature 71 79 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01027 781 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01027 781 PRINTS Plant CLC chloride channel signature 296 306 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01027 781 PRINTS Plant CLC chloride channel signature 314 321 IPR002251 GO:0005247|GO:0006821|GO:0016020
Bva04g01027 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 31 779 - -
Bva04g01027 781 SUPERFAMILY Clc chloride channel 75 589 IPR014743 -
Bva04g01027 781 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01027 Bva-Chr4 6741531 6747206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01027 5 779 Ion Channels AT5G49890 72.144 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01027 K05016 - jre:108982434 1214.91