Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01004 ATGTCAACCCGTAGATATGCCTTTGGAAGGGTAGACGAGGCTACCCACCCAGACTCCATGAGAGCCACCTTAGCTGAATTCGTCTCCACTCTCATCTTTGTCTTTGCTGGGGAGGGCTCTATTCTGGCTCTGGACAATATTTACAGGGATTCAGGCTCATCAGCGGGCGAGCTAGTGACTATTGCACTAGCTCATGCATTCGCTCTGTTTGCAGCGGTTGCGGCCAGCATGCATGTTTCCGGTGGCCACGTGAACCCGGCGGTGACTTTCGGTGCCCTCCTCGGCGGAAGGATCTCTGTCCTGCGTGCCGTCTACTACTGGATTGCTCAAATTCTGGGTGCCATAGTGGCGGCACTCCTGCTCAGGCTTGTTACCGCTGGCatgAGACCCGCAGCGTTCCACGCAGGACCCGGCGTTACAGCTATACACGGCTTGATATTTGAAATAGTGATGACATTTGGACTGATGTACACGGTTTATGCCACGGCCATCGATCCCAAAAGAGGAACCAACGGCGCACTTGCACCCTTGGCAATTGGGCTCATAGTTGGGGCCAACATTCTGGTTGCAGGCCCATTTGACGGAGGATGCATGAACCCAGCCCGGGCCTTTGGGCCTGCTTTGGTGGGCTGGAGATGGAGGAACCACTGGATCTACTGGGTCGGCCCACTTATTGGGAGTGGGCTGGCAGCACTGATTTATGAATACATTGTGATCCCAATAGAGCCACCTCATGCTCATCAACCTTTGGCTCCCGAGGACTATTA 767 0.5437 MSTRRYAFGRVDEATHPDSMRATLAEFVSTLIFVFAGEGSILALDNIYRDSGSSAGELVTIALAHAFALFAAVAASMHVSGGHVNPAVTFGALLGGRISVLRAVYYWIAQILGAIVAALLLRLVTAGMRPAAFHAGPGVTAIHGLIFEIVMTFGLMYTVYATAIDPKRGTNGALAPLAIGLIVGANILVAGPFDGGCMNPARAFGPALVGWRWRNHWIYWVGPLIGSGLAALIYEYIVIPIEPPHAHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01004 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Bva04g01004 255 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Bva04g01004 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
Bva04g01004 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g01004 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Bva04g01004 255 Gene3D Glycerol uptake facilitator protein. 4 243 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01004 Bva-Chr4 6555813 6557760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01004 4 255 Major Intrinsic Protein MIP AT1G17810 71.264 9.17e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01004 K09873 - gmx:100817450 407.142