Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00992 ATGGATCAGAAAGCAACCGAGAGAAGTGGccaaaatgatttgaaatttaagtgTACAAAGATCCTTCATGGAATtgataaacaaattacaattcaGACACCAGAGAAAATCACTGAATCTTTATACACTAGATATAAAGAGGGACAAATCCAGCTTCCTGAAAAatACAGGACCATAGCGGATTTGTTTGATCATATGAGTTGTTCATTGAGGTTACTCAATCTGCGTAAAAAGTCTACAACTTTTCAAAACATTTGTACTCAGGTTGAAGTTCTGGCCAAAAGaaaattctTGTACCCACATCTTGCTCAGATGAAGTATATTCTTCCTGAAGCCATTCATATAGATAAGATACTAGTACATGACAAGAAAAGCTTGTGTATGAAGCCAGATTTGAAGATTACCTTAACATTTGAAGTTGTGGAAGAAAACTCTAGTGAATCTGCTTATTTATCTCTTGGCAAACTTTTTGGTTCTAGGCTGATTGATTTCTTCTCTAAGCATCCTGAGGCTACTGATGTTCCTGAGGCCATATTACCAGAGCCTTTTAGCCAAAGGACTCCTAGCTTTTTATGTGAGGATTTGCTGGCAGATTCTTCAGCAGTACTTTCACAAACTTCagatgaaaatcaaattttgtcaGAGAAATTACATCCGTATCCCTCTTTCAGTAGACATTTCTCTCAGCAAAATATTGTTGACATGACAGAAAAGGTCCAGTGTTTTTTATCAGCTCAGACTGCTTTGTCATATTCTGCATCTGATCACCTATGTAATGAAGAAAGTGAAAGCGGATGGAAAAAAGGATCCTCTTCTTTGCGTTTGAAATCTGATGCCACGATTGATCAGGACATAGAACGAGGACAGCAGGAGGAATCATGTTCTATGTGTTCTCAACCAAGTTTTATTAATACACCAGCACATCAGATCTTCCCCCCTCACTCTCTCAGCTGTGGTAGTTCTGAGAGCCCCAATATCAAGGTTGCTTCACCCactgataatttaataacGGAGACACCTGTGCGGTTAGCTCCTAGGAGAGTAATATCCAGCTCTGATGTTAAAGTTCAGACTGTGGTCACCCAAAAATCAACTTCATGTTATAAACCTGCAAAAAGAGTTCTTGACTTTTCACGTTTGGAAGGTGATAATGATGCATTGGACCTTTGGGAAAACAAGTTAGAATCTAGCAGAGTGGTGCATGATAACATCTGTGATGCAAGTCGAGGAAGTTCTGAGGGGTGCAAAGCTTCTGGGTCTGTTGTTCTACCCCAGGAGGTAGAAGAGAGCCTTGGTTGTTCTCATGAGACTCCCAACCGAATACAAGCAGGTTTAGCAACAGAACAGcaaatttcttcatcattgATTGACCTAGTCGATGTGATTCACTCAGTATTTTGTTCTGTCAAATACTCTCCAATCACAAAAGAAGAGTTACTgcacaaaataattatgaatagTCTAGACTATGTTGAGATAAGAGAAGTTGAAGAAAGATGTGAGATTCTTGAAAAGGTTGTGCCGGATTGGATCTGCAAGAAGTTGGTGCCAACTGGAGATGCTATGTACTGTATCAAGAAAGTATCAGATTTGGACTCAGTTCGCTCAAAGCTCTGTAGCAATGTTGCTATAGGAGTTGAGTA 1643 0.3731 MDQKATERSGQNDLKFKCTKILHGIDKQITIQTPEKITESLYTRYKEGQIQLPEKYRTIADLFDHMSCSLRLLNLRKKSTTFQNICTQVEVLAKRKFLYPHLAQMKYILPEAIHIDKILVHDKKSLCMKPDLKITLTFEVVEENSSESAYLSLGKLFGSRLIDFFSKHPEATDVPEAILPEPFSQRTPSFLCEDLLADSSAVLSQTSDENQILSEKLHPYPSFSRHFSQQNIVDMTEKVQCFLSAQTALSYSASDHLCNEESESGWKKGSSSLRLKSDATIDQDIERGQQEESCSMCSQPSFINTPAHQIFPPHSLSCGSSESPNIKVASPTDNLITETPVRLAPRRVISSSDVKVQTVVTQKSTSCYKPAKRVLDFSRLEGDNDALDLWENKLESSRVVHDNICDASRGSSEGCKASGSVVLPQEVEESLGCSHETPNRIQAGLATEQQISSSLIDLVDVIHSVFCSVKYSPITKEELLHKIIMNSLDYVEIREVEERCEILEKVVPDWICKKLVPTGDAMYCIKKVSDLDSVRSKLCSNVAIGVE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00992 547 PANTHER EXPRESSED PROTEIN 7 540 - -
Bva04g00992 547 Pfam DNA replication factor CDT1 like 52 119 IPR014939 -
Bva04g00992 547 PANTHER DNA REPLICATION FACTOR CDT1 7 540 IPR045173 GO:0003677|GO:0030174|GO:0071163
Bva04g00992 547 Pfam DNA replication factor Cdt1 C-terminal domain 442 511 IPR032054 -
Bva04g00992 547 Gene3D - 444 543 IPR038090 -
Bva04g00992 547 SUPERFAMILY "Winged helix" DNA-binding domain 47 183 IPR036390 -
Bva04g00992 547 SMART CDT1_2 52 181 IPR014939 -
Bva04g00992 547 CDD Cdt1_m 46 190 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00992 Bva-Chr4 6482970 6487238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00992 455 538 Core DNA Replication Machinery Family AT2G31270 40.476 2.31e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00992 K10727 - gmx:102670055 541.191