Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00972 ATGTCTTCTGCCGGCGGGAACTCCGgcggtggtggtggtgctgCTGCGGGTGTTGTACCCGGTGCTTCTCAAAACTATTTCTGCTACCAGTGCGACCACACTGTCTCCATTTCTCCCTCCTCCTCTGATCTCGTCTGTCCGAATTGCAACGGTGGTTTTATTGAAGAACTGGAAAATCCAATCCGTAGCTTCAATCCTAACCCTACCAGTCCCTTTTTCTCGTTCACGTCGGAGTTTAGTGGCGGAAGTGCTGGATTTCCTCTCATCTTCTCCTCCAGTGGCGGCAGTGGTGCCGGTGGACCGATGTTCGATGATCTTTCTGCGCTATTTGGCTCTGGACCTAACCGATCGTCCCCTTTTTCAGACCCCGATGCCTTCAACCCTTTTGTGTTCCTTCAGAACTATCTTCAAACCCTTAGAGCTGGTGGTGCTAACGTACAATTTGTGATAGAGAACTCGGCAGACCCAAGTGGTGGCCTCCGTCTTCCCACCAATCATAATCTTGGTGATTACTTTTTCGGCCCTGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAATGATCCCAACCGATATGGGACACCCCCAGCTTCAAAATCTGCTATTGCGGGGCTGCCTAATATCAAGATTTCCGAGGAGTTGTTGGCTTCTGATTCATCGCAGTGTGCAGTGTGTAAAGACTCATTTGAGCTTGGGGAAGTGGCAAAACAGGTGCCATGCAAACACATTTATCATAATGATTGCATTATTCCTTGGCTAGAATTGCACAATTCTTGTCCTGTTTGCCGGTACGAGTTACCAACTGATGATCCTGATTACGAGCAAAGGATTCGTGGCACTTCTGGCTCTGTTCACGTGAATCGAAACCAATCCACGGGGGTTGGTGGCTCCGCTGACTCCTCTGAAGGTGGTAATGCTGGAGGTGGTAGTGCTGGTGCAGCATCCGGGGAAAACGTTCAGACACCAAGAACAGTTGAGCGAAGGTTTAGAGTTTCTTTGCCGTGGCCTTTTAGGCAATTTGGTTCCGTTGCAGAGACCAGCAGTGTTGGGAATGCCAACAATAGTGGAAATAATAGTGGGGAATCAAATCCTGGAAGTAGGGGAAATCAGAATTTTGGGTCAGAGACCAGACAAGAAGATCTCGACTA 1148 0.4808 MSSAGGNSGGGGGAAAGVVPGASQNYFCYQCDHTVSISPSSSDLVCPNCNGGFIEELENPIRSFNPNPTSPFFSFTSEFSGGSAGFPLIFSSSGGSGAGGPMFDDLSALFGSGPNRSSPFSDPDAFNPFVFLQNYLQTLRAGGANVQFVIENSADPSGGLRLPTNHNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIAGLPNIKISEELLASDSSQCAVCKDSFELGEVAKQVPCKHIYHNDCIIPWLELHNSCPVCRYELPTDDPDYEQRIRGTSGSVHVNRNQSTGVGGSADSSEGGNAGGGSAGAASGENVQTPRTVERRFRVSLPWPFRQFGSVAETSSVGNANNSGNNSGESNPGSRGNQNFGSETRQEDLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00972 382 MobiDBLite consensus disorder prediction 346 382 - -
Bva04g00972 382 SMART ring_2 222 262 IPR001841 -
Bva04g00972 382 CDD RING-H2_RNF126_like 221 263 - -
Bva04g00972 382 Pfam zinc-ribbon 24 57 IPR039525 GO:0061630
Bva04g00972 382 MobiDBLite consensus disorder prediction 280 299 - -
Bva04g00972 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 269 IPR013083 -
Bva04g00972 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 19 348 - -
Bva04g00972 382 MobiDBLite consensus disorder prediction 346 376 - -
Bva04g00972 382 SUPERFAMILY RING/U-box 205 270 - -
Bva04g00972 382 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
Bva04g00972 382 Pfam Zinc finger, C3HC4 type (RING finger) 221 262 - -
Bva04g00972 382 MobiDBLite consensus disorder prediction 273 324 - -
Bva04g00972 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 19 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00972 Bva-Chr4 6379320 6384243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00972 163 275 C3H Transcription Factor Family AT5G01980 50.442 2.74e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00972 K11982 - mnt:21384501 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00972 04 6379320 6384243 Bva04g00972 04 6379320 6384243 ECH