Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00956 ATggtgagaaagagaaggacTGAAGTACCCAGAGGGGGAGAAAGTTCTGAGACTCAAGAGGGTGGTGGTAGTGGTCAGGGTCCTCAACGCCCTGGTGAAAGGAGTTCTCCAACCCAACATGTGGCCGGAAGTGGACCTAGTGGTGGTAGAGGTTGGGGTCCTCAAGGAGGACGAGGGAGTTATGGCACAGGTCGCAGTGGTGGGGTACCCAGAGGGGAAGAAAGTTCTGAGACTCAAGAGGGTGGCGGTAGTGGTCAGGGTCCTCTGCACCTCGCTGAAAGGAGTTCTCTGCCCCAACATGCGGCAGGAGGTGGACCTCAAGGTGGTAGAGGTTGGGGTCCTCAAGGAGGACGGGGGAGTTATGGTGGGGGTCGCAGTGGTGGAGTACCCCAGCAGCAGTATGGTGCCCCTTCTGAGTACCAAGGTCCTCAAGGAGGTCGAGGGAGTTATATCTGGGGTCGTAGTGGTGGGTTATCCCAGCAGCATTATGGTGCCCCTTCTGAGTATCAAGGTAGGGGGAGAGGAGGGCCTTCTCATCGCGGAGGTCGCGGTGGCGGCGGCGGTCGTGGTTTAGGACCTTCTTATGGTGGCCCATCTCGGCCACCACTACCTGACCTGCACCAAGCTGCCCCAGTTCCATATGATCAAGCTGGAATGACACCTCAGCCTGCATCATCTGAGGCAAGCTCTTCTTCACAACCATCTGAGCCATCAAAAGTGGAAGAACAATTTATGCAGATGACAATTCAGTCAGAATCTCCAGCTCCTCCTCCTGCCTCCAGTAAATCAATGAGGCTTCCACTCCGGCCTGGAAAGGGTAGTTATGGTACTGGATGCATAGTAAAGGCTAATCACTTTTTTGTTGAGTTACCCAGCAAGGATCTGCACCAGTATGATGTTACCATCACCCCTGAGGTGACTTCCAGAGGTGTGAACTGTGCTGTGATGGAGCAGCTTGTTAGGCTCTACAGGGAGTCACATCTAGGCAAGAGACTTCCAGCCTATGATGGTCGAAAGAGCTTATACACTGCTGGCCCActtccttttatttcaaagGAGTTTAGGATCACCCTCATCGATGAAGATGATGGATCAGGAGGGAATAGgagagaaagagagttcGGAGTTGTGATAAAATTGGCTGCACGTGTAGACCTGCATCATTTAGAACAGTTTTTGCGGGGAATGCAACCTGATGTACCTCAGGAAGCTCTGCAGGCTCTTGACATTGTTCTGCGTCAGCTACCTAATACTAGGTTTTGTCCTGTAGGAAGATCTTTTTATTCACCTGATCTTGGTCGAAGGCAACCCTTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTACCAAAGTATCCGTCCAACCCAGATGGGTTTATCTCTAAACATTGACATGTCGTCCACTGCATTCATTGAGCCATTGCCAGTAATTGACTTTGTAACTCAGCTGCTGAACAGAGATGTTTCCACTAGACCATTATCTGATGCTGATCGTGTGAAGATCAAAAAAGCTCTTCGTGGTGTCAGAGTTGAAGTTACACACCGTGGAAACATGCGCAGAAAATATCGTATATCTGGTTTAACATCACAGGCGACAAGAGAACTGACATTCCCTGTTGATGAGAGGGGTACAATGAAGTCTGTTGTGGAGTATTTCTACGAGAAATATGGCTTTGTCATTCAACATACGCAGTGGCCATGTTTACTTGTGGGCAATCAGCAGAGACCAAACTATTTACCTGTGGAGGTTTGCAAGATAGTAGAAGGTCAAAGGTACTCTAAGAGGTTGAATGAGAGGCAGATTACTGCTTTGCTGAAAGTGACATGCCAGTATCCTTTGGAAAGGGAGAAAGATATTTTGCAGACCGTTCATCACAATGCTTACCATGAAGATCCTTATGCAAAAGAGTTTGGAATCAAAATCAGTGACAAGCTCGCTCGAGTTGAAGCCCGCATTCTTCCTGCTCCCCGGCTTAAGTATCATGATACAGGTAGAGAAAAGGATTGCCTACCTCAAGTTGGCCAGTGGAATATGATGAATAAGAAAATGGTGAATGGGGGTACGGTTAACCACTGGATCTGCATAAATTTTTCAAGGAGTGTTCAAGATGGTGCGGCTTCTGGATTTTGCTATGAGCTTGCCAAAATGTGTAACACATCTGGCATGGCATTTAATCTAGATCCAGTACTTCCCCCTTTTCATGGCCACCCTGACCAGGTTGAGAAGGTTCTGAAAACTCGGTATCATGATGTCATGACTACATTGCGTAAAAAGGAGCTTGATCTCCTTATTGTTATTTTGCCTGATAATAATGGCCCTCTTTATGGTGAATTGAAACGTATATGTGAGACTGATATTGGGATTGTCTCCCAGTGCTGCTTGACTAAGCATGTCTACAAAATGAATAGGCAGTATCTTGCCAATTTGGCtttgaaaattaatgtgaaGGTTGGCGGAAGGAACACAGAGCTTGTTGATGCACTTTCCCGGCGCATACCTTTAATCAGTGATCTTCCTACAATTATATTTGGAGCTGATGTTACTCATCCACATCCTGGAGAAGATTCAAGTCCATCTATAGCAGCTGTTGTGGCTTCGCAAGATTGGCCTCAAATTACACAGTATGCTGGTCTGGTTTGTGCTCAAGCACATCGGCAGGAGCGCATTCAAGACCTTTACAAGCAGTGGCAAGATCCAGTGAAGGGAACATTAACTGGTGGAATGATCAAgGAACTTCTTATTTCCTTCCGGAGGGCCACAGGACAGAAGCCGCTGCGTATCATATTTTACAGGGATGGAGTGAGTGAGGGACAATTCTATGAGGTTTTGCTGTTTGAGCTCGATGCTATTCGGAAGGCATGTGCATCCCTTGAGCCAAACTATCATCCTACCGTCACATTTGTGGTGGTTCAGAAGCGTCATCACACAAGGCTTTTTGCCAACAACCATCGTGATAGGAGTTCTGTTGATCGGAGTGGAAACATATTGCCTGGTACTGTGGTAGACTCCAAAATCTGCCATCCCACTGagtttgatttttatctttgtagCCATGCTGGGATACAGGGGACAAGCCGTCCGGCACACTACCATGTTTTATGGGACGAAAACAATTTTTCAGCAGATGAAATCCAAAGCCTCAGCAATAATCTCTGCTATACTTATGCAAGATGCACTCGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCTCATTTGGCTGCTTTCCGAGCTCGATTTTACATGGAACCTGAGCCATCGGATACTGGGTCAATGGCGAGTGGTGGTGCCACCGGCCGTGGTGGGGGTATGGGTGGTGGCAGCCTGAGTGGCCCAGGACGGAGCACTCGGGCACCTGCAAATGCTGCTGTTAGGCCCCTTCCTCCTCTCAAGGAGAACGTGAAGAGGGTTATGTTCTACTGTTA 3425 0.4695 MVRKRRTEVPRGGESSETQEGGGSGQGPQRPGERSSPTQHVAGSGPSGGRGWGPQGGRGSYGTGRSGGVPRGEESSETQEGGGSGQGPLHLAERSSLPQHAAGGGPQGGRGWGPQGGRGSYGGGRSGGVPQQQYGAPSEYQGPQGGRGSYIWGRSGGLSQQHYGAPSEYQGRGRGGPSHRGGRGGGGGRGLGPSYGGPSRPPLPDLHQAAPVPYDQAGMTPQPASSEASSSSQPSEPSKVEEQFMQMTIQSESPAPPPASSKSMRLPLRPGKGSYGTGCIVKANHFFVELPSKDLHQYDVTITPEVTSRGVNCAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDEDDGSGGNRREREFGVVIKLAARVDLHHLEQFLRGMQPDVPQEALQALDIVLRQLPNTRFCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYEKYGFVIQHTQWPCLLVGNQQRPNYLPVEVCKIVEGQRYSKRLNERQITALLKVTCQYPLEREKDILQTVHHNAYHEDPYAKEFGIKISDKLARVEARILPAPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRSVQDGAASGFCYELAKMCNTSGMAFNLDPVLPPFHGHPDQVEKVLKTRYHDVMTTLRKKELDLLIVILPDNNGPLYGELKRICETDIGIVSQCCLTKHVYKMNRQYLANLALKINVKVGGRNTELVDALSRRIPLISDLPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPQITQYAGLVCAQAHRQERIQDLYKQWQDPVKGTLTGGMIKELLISFRRATGQKPLRIIFYRDGVSEGQFYEVLLFELDAIRKACASLEPNYHPTVTFVVVQKRHHTRLFANNHRDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLSNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEPSDTGSMASGGATGRGGGMGGGSLSGPGRSTRAPANAAVRPLPPLKENVKRVMFYC 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00956 1141 SUPERFAMILY PAZ domain 468 628 IPR036085 GO:0005515
Bva04g00956 1141 Pfam Mid domain of argonaute 671 746 IPR032473 -
Bva04g00956 1141 Gene3D paz domain 467 592 - -
Bva04g00956 1141 CDD PAZ_argonaute_like 473 587 - -
Bva04g00956 1141 SMART Piwi_a_2 762 1083 IPR003165 GO:0003676
Bva04g00956 1141 CDD Piwi_ago-like 632 1082 IPR045246 -
Bva04g00956 1141 ProSiteProfiles Piwi domain profile. 762 1083 IPR003165 GO:0003676
Bva04g00956 1141 Gene3D - 831 1141 IPR036397 GO:0003676
Bva04g00956 1141 SUPERFAMILY Ribonuclease H-like 748 1084 IPR012337 -
Bva04g00956 1141 Pfam PAZ domain 478 603 IPR003100 GO:0005515
Bva04g00956 1141 Pfam Argonaute linker 2 domain 614 660 IPR032472 -
Bva04g00956 1141 SMART PAZ_2_a_3 478 610 IPR003100 GO:0005515
Bva04g00956 1141 Pfam Piwi domain 763 1082 IPR003165 GO:0003676
Bva04g00956 1141 MobiDBLite consensus disorder prediction 17 43 - -
Bva04g00956 1141 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 165 1140 - -
Bva04g00956 1141 Gene3D - 652 825 - -
Bva04g00956 1141 ProSiteProfiles PAZ domain profile. 474 588 IPR003100 GO:0005515
Bva04g00956 1141 Pfam N-terminal domain of argonaute 279 412 IPR032474 -
Bva04g00956 1141 MobiDBLite consensus disorder prediction 219 258 - -
Bva04g00956 1141 MobiDBLite consensus disorder prediction 1087 1121 - -
Bva04g00956 1141 MobiDBLite consensus disorder prediction 1 270 - -
Bva04g00956 1141 PANTHER PROTEIN ARGONAUTE 1A 165 1140 - -
Bva04g00956 1141 Pfam Glycine-rich region of argonaut 164 254 IPR024357 -
Bva04g00956 1141 Pfam Argonaute linker 1 domain 422 472 IPR014811 -
Bva04g00956 1141 SMART DUF1785_2 421 473 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00956 Bva-Chr4 6288674 6296523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00956 168 1141 Eukaryotic Initiation Factors Gene Family AT1G48410 77.416 0.0 1531