Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00953 ATGCAGGATCAGACAGAAGGCACAAGGCGTAGCACTGCTGCCATAGCTGGTAATTTTTATTCCAGCGGAGGTGCACAATCAGAAAATGTTATTCAATATGCCGATGGAACTTCTGTTGGAAACAACCATGCTCCCAAGCTGAGGAAACCATATACCATCAGTAAGCAAAGGGAAAAATGGACTGAGGAAGAGCATCAGAAGTTCCTTGAAGCTTTGAAATTGTATGGCCGAGGTTGGCGTCAAATTGAAGAACATGTAGGGACCAAAACTGCAGTCCAGATTCGAAGCCATGCTCAAAAGTTTTTCACAAAGGTAGCGCGGGAATCAAATGGGTGTACCGAAAGTTCTATAAAACCAATTGATATACCTCCTCCTCGGCCAAAGAGGAAGCCCCTCCATCCATATCCTCGTAAATCAATTGATTCTTATAAAGGGCACTCAATATTAAATGAAACTGAAAGATCCCCATCCCCAAATCTGGTGATTTCAGAGAGGGATACTCAATCTCCGACCTCGGTGCTAACTGCACCTGGTTCTGAAGCACTTGGGGAAAATGACTGCCTGACATCCAATTTGTCTGAGGATGAAGAGAAAGGATCTCAAGCTGCATCTCCTTTACCAACTGGTCTAAATCAAGATTGTCTGTCCATGAAGTTGGAGGTAAGTTCTAAGGAAACCAAATGTTCTAAAGAAGCTACCACTGATGTGCCAACTACCTCGAGTATTAAACTTTTTGGAAGAACCGTCTCCTTTGTAGATAGGAAGAAGTCATTGAATGTAGATGAGAAGAATATTAAGTCAATTGCTTGTAACTCTGATGAAGTGGTTATTATTGAGAATGAGAAGCTCGGTCAAGCATGGCCATCCAACCAAATAGATACAAAATTATCACTGGGCGTTTGTAACGGTGATTGGAATACAGCACCTGATGGAGCTCAAGTGAAATGCATGGAATACCCAAAGGAGAATCCCAGCCCTGTTGAATGCATGCCTGGGTGGAATTTGTACCAAGGTTTCCCAGTTTTTGACCTTGGTCCAGGTAACCAAATTCCAAACCCAGAACCCCTTCGTCCCtctttaaaggaaaaaatggcAGAGAAGGAAAGTTCTTCTACTGGTTCTAATGCTGAATCAGTAAGCGAAACTACAAATGGAGACAGAAACACTGATGCTGGTGATTCTCAGAGTCAATCACCTCATCATGACAGAGGAACTGTCCCCCACAAGTCTCCAAGGGGATTTGTACCATACAAAAGATGTTTAGCTGAGAGAGAATCAAACTCGTTAATTGTTGCATTGGAGGAGAGGAAAGGGCAAAGAGCTCGGGTGTGCTCATA 1337 0.4271 MQDQTEGTRRSTAAIAGNFYSSGGAQSENVIQYADGTSVGNNHAPKLRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFTKVARESNGCTESSIKPIDIPPPRPKRKPLHPYPRKSIDSYKGHSILNETERSPSPNLVISERDTQSPTSVLTAPGSEALGENDCLTSNLSEDEEKGSQAASPLPTGLNQDCLSMKLEVSSKETKCSKEATTDVPTTSSIKLFGRTVSFVDRKKSLNVDEKNIKSIACNSDEVVIIENEKLGQAWPSNQIDTKLSLGVCNGDWNTAPDGAQVKCMEYPKENPSPVECMPGWNLYQGFPVFDLGPGNQIPNPEPLRPSLKEKMAEKESSSTGSNAESVSETTNGDRNTDAGDSQSQSPHHDRGTVPHKSPRGFVPYKRCLAERESNSLIVALEERKGQRARVCS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00953 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Bva04g00953 445 MobiDBLite consensus disorder prediction 362 413 - -
Bva04g00953 445 MobiDBLite consensus disorder prediction 145 211 - -
Bva04g00953 445 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Bva04g00953 445 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Bva04g00953 445 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Bva04g00953 445 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Bva04g00953 445 PANTHER PROTEIN REVEILLE 7-RELATED 2 432 - -
Bva04g00953 445 CDD SANT 59 102 IPR001005 -
Bva04g00953 445 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Bva04g00953 445 PANTHER SWI/SNF COMPLEX-RELATED 2 432 - -
Bva04g00953 445 SMART sant 56 104 IPR001005 -
Bva04g00953 445 MobiDBLite consensus disorder prediction 112 211 - -
Bva04g00953 445 Gene3D - 59 106 - -
Bva04g00953 445 MobiDBLite consensus disorder prediction 369 401 - -
Bva04g00953 445 MobiDBLite consensus disorder prediction 123 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00953 Bva-Chr4 6263722 6267112 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g00953 Myb_DNA-binding 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00953 - - gmx:778089 488.034